PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23724.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 364aa    MW: 41378.3 Da    PI: 8.1331
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23724.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox695.7e-2276135357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 +R+++++eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  KHN23724.1  76 SRWNPSPEQLRALEELYRRgTRTPSAEQIQHITAQLrrfgNIEGKNVFYWFQNHKARERQ 135
                 7*****************99**************************************97 PP
2Wus_type_Homeobox111.25.5e-3675137365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+P+peQ++ Leely++G+rtP++e+iq+ita+L+++G+ie+kNVfyWFQN+kaRerqk+
         KHN23724.1  75 SSRWNPSPEQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKR 137
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-573140IPR001356Homeobox domain
SuperFamilySSF466892.65E-1276141IPR009057Homeodomain-like
PfamPF000461.3E-1976135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-976135IPR009057Homeodomain-like
CDDcd000866.07E-777137No hitNo description
PROSITE profilePS5007111.35381136IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MWMMGYEGGE INMVEHSLST GRKLKPLMPR PMTTTTTPSL SHIHGNDFLS QYRYHHLVAE  60
KNKREFNGAT PVVVSSRWNP SPEQLRALEE LYRRGTRTPS AEQIQHITAQ LRRFGNIEGK  120
NVFYWFQNHK ARERQKRRRQ MESDAEPPEK KDLAASRTVF EVERTKNWTP STNCSTMAEE  180
SVSTQRTAKA VAAAESRTDG WLLLDEGELQ QRRNLFERNA TWHHVMQLPC PSPSAPVTHL  240
INTTPNASAA SSSMTTTTTT VTTTRRRKMD PNLIIKTHDL SFFISPLQRE NSVIYLSSSS  300
STSEDDNCVD ESQTLQLFPL RSTGDGSSDN MMKDNETEIS TSAMNNANNL TTPGQFFEFL  360
PMKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268TRRRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23724.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984091e-161BT098409.1 Soybean clone JCVI-FLGm-16H23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180413.10.0WUSCHEL-related homeobox 1-like
TrEMBLA0A0B2QUI70.0A0A0B2QUI7_GLYSO; WUSCHEL-related homeobox 1
STRINGGLYMA09G30831.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.18e-53WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]