PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23640.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 626aa    MW: 70319.4 Da    PI: 6.9337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23640.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.4e-15426472455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A+eY+k+L+
  KHN23640.1 426 NHVMSERRRRAKLNQRFLTLRSMVPSiS------KDDKVSILDDAIEYLKKLE 472
                 799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-506184IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.666422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18425484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-14425475No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17426481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12426472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-14428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MVPENLKKQL ALAVRSIHWS YAIFWTDSTT QPGVLSWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELFKSLKTV EVSPQTKRPS AALSPEDLTD AEWYYLVCMS FIFNIGQGLP  120
GRTLAKGQSI WLNNAHSADC KIFSRSLLAK TVVCFPFREG VIELGTTEQV SEDLSVIERI  180
KTSFLNSLHV DVPNKSVATL KSRKQEDLSY VAFDHNDYNV ESIPEVGYEI ANTTSPNGSS  240
NAIQANQPLD DTLMVESITN GTSQVQNWQV IDDELSNCVH NSMNSSDCIS PTFASLENIA  300
SAPKCNNPSD PCARDFQKCN NPKMTLVDPR SDEWHYQRVI STLIKNTDQL LMGMHLQKFP  360
QASSFVSWRK GEPMDSQWPR AGTSQKLLKK VLFEVPQMHL DGLHESQEEN DYKEGMRVEA  420
DENGMNHVMS ERRRRAKLNQ RFLTLRSMVP SISKDDKVSI LDDAIEYLKK LERRINELEA  480
HRGVTDIETG TRRSPQDTVE RTPDHYFSKN NNNNGKKPGM KKRKACGVDE KGREINLDAL  540
KGSYANDVIV STSDNGIVIE MKCPSRAGRM LEIMEAINSF NIDFSSVQST EADGNLYLTI  600
KSVLTGPRVA TAKRIKLALQ KVASKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1441847192Transcription factor MYC3
4rqw_B2e-1441847192Transcription factor MYC3
4rs9_A2e-1441847192Transcription factor MYC3
4yz6_A2e-1441847192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525395.10.0transcription factor EGL1-like
RefseqXP_028233561.10.0transcription factor EGL1-like
TrEMBLA0A0B2QQE50.0A0A0B2QQE5_GLYSO; Transcription factor GLABRA 3
STRINGGLYMA05G37770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-169bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]