PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23410.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 269aa    MW: 29663.5 Da    PI: 4.374
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23410.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.74e-362782660
      zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg.rrknkk 60
                 +cprC stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg  r+ k+
  KHN23410.1 27 PNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGgNRRGKS 82
                68********************************************9762566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-211867IPR003851Zinc finger, Dof-type
PfamPF027014.5E-312779IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.3442781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MLHPRHMVTP MEEQQRSRWK PSVEVAPNCP RCASTNTKFC YYNNYSLSQP RYFCKGCRRY  60
WTKGGSLRNV PVGGGGNRRG KSLQSSSSRQ QRASSFVSGD TESSFSDAQQ INNGSRDIDM  120
ALVFAKFLNP KPTTGEDNNG SSSTSNNFTP ESVEIENDAV VQSQNKASSD PVIVESENLS  180
LGEIDELERL LGVCGDEDGL WSDATLSSSV TWEPPLKELE YSMPLNEDDD DAQLLPIITS  240
ASTMISDSCW SNWSSFDLST MEAFSSSPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572741e-110DQ857274.1 Glycine max Dof23 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527971.11e-170dof zinc finger protein DOF3.5
RefseqXP_028236027.11e-170dof zinc finger protein DOF3.5-like
TrEMBLA0A445K8N81e-169A0A445K8N8_GLYSO; Dof zinc finger protein DOF3.5
TrEMBLK7KUP91e-169K7KUP9_SOYBN; Uncharacterized protein
STRINGGLYMA06G12950.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-31Dof family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]