PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23038.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 544aa    MW: 61725.8 Da    PI: 4.6963
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23038.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.93.9e-381785433374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL +  ea+++g+++l + +L r+s+ asp g++++R a+y+ +++ ++           l+ ++      ++    l+++++ +Pi k++h++a ++
  KHN23038.1 178 HLLKAYGEALEQGQKALEEVTLRRISQKASPLGESLERFAFYLSQGMTNHGDY--------LKGEAF-----KNFGITLRALYQGFPIGKIAHFAAVST 263
                 78888999***************************************998766........444444.....466777899****************** PP

        GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..ele 192
                 Ilea+ ++ + vHi+Df i++G+QWp++++a+a       +l++T+++   +g     s  +  et+++L + A+++g++++ +    k +e+l  e++
  KHN23038.1 264 ILEAMPQDyDVVHIVDFCIGHGVQWPPMIEAIAHM---HKTLKLTTIKWGGEGsecvsSPCNFDETRRQLYEHAKSCGLKLKVEE---KGVEELvtEIK 356
                 *****9998999*********************86...456999999876555667778999*******************9987...56666622455 PP

        GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres.e 280
                 +++ k   +E la n+++ l ++   +v ++++  ++L++  +l     +  ++++ +     +  n+ +F   f   l +y  l++s+e+ +p+   e
  KHN23038.1 357 KMNKKGgrREFLAFNCMIDLPHMG--KVRSRKNALQFLRVAEELintsgNRGIITFGDGGafEKVkNNLNFWSFFYGHLVHYQILLESMESHFPTRFsE 453
                 555444779**************9..555555579999999988544445569***9998432336999***********************9987559 PP

        GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                  ri +E+ +l++ i+++   ++ e  +r  +l        e  ++  +ls+++ ++++ +lr+ + s   ++e +++++lvl  k+ +L+ +S W+
  KHN23038.1 454 VRIAMEQLFLQPCISSLDWLQTWEEMKRGDHL------EAETSLEGCQLSKNILMEIREVLRESEgSYQAKIEgQHDNELVLEYKGTQLLRFSTWK 543
                 9*************999888888744554443......45788999*******************55555565888*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.912150521IPR005202Transcription factor GRAS
PfamPF035141.3E-35178543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MMQSEDLQFQ WPFFEDMNST FDQGVESYGF TTMDDHVGNC EPYGFTMDDH VGDCGLSTLL  60
STPGDSTSEI CSIPFPSSPM FSNDHIHIQY PINEETMDLP SLMELDDFYS ILDTQIISIQ  120
GHGESEGSFF PSQNLSSEVE NAWSPTPSVM SELSTNQTSP LTLPLENMEI EKQVSLPHLL  180
KAYGEALEQG QKALEEVTLR RISQKASPLG ESLERFAFYL SQGMTNHGDY LKGEAFKNFG  240
ITLRALYQGF PIGKIAHFAA VSTILEAMPQ DYDVVHIVDF CIGHGVQWPP MIEAIAHMHK  300
TLKLTTIKWG GEGSECVSSP CNFDETRRQL YEHAKSCGLK LKVEEKGVEE LVTEIKKMNK  360
KGGRREFLAF NCMIDLPHMG KVRSRKNALQ FLRVAEELIN TSGNRGIITF GDGGAFEKVK  420
NNLNFWSFFY GHLVHYQILL ESMESHFPTR FSEVRIAMEQ LFLQPCISSL DWLQTWEEMK  480
RGDHLEAETS LEGCQLSKNI LMEIREVLRE SEGSYQAKIE GQHDNELVLE YKGTQLLRFS  540
TWKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240513.10.0nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLA0A0B2QT710.0A0A0B2QT71_GLYSO; Nodulation-signaling pathway 2 protein
STRINGGLYMA07G18934.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-14GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]