PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN22402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 34209.3 Da PI: 8.8855 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93 | 2.2e-29 | 159 | 218 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d++v++ tYegeHnh+ KHN22402.1 159 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSVDDQSVLVATYEGEHNHT 218 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-29 | 150 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.372 | 154 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-25 | 156 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.2E-33 | 159 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-24 | 160 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDYSSWINTS LDLNINLHRV HEELPKKQVE NNFFSLDLEV KKSSVKQESA GALAEELKRV 60 SAENKKLTEM LTEMCENYNT LRSNLMEYMR KNPDKELSSS KKRKSASSNN NSTIPMGVNG 120 TSESSSTDEE SCKNPKEDMK TKISRVYMRT EASDTSLIVK DGYQWRKYGQ KVTRDNPSPR 180 AYFKCSFAPS CPVKKKVQRS VDDQSVLVAT YEGEHNHTHP SQMEVTTGSN RSVSCSASLS 240 SSAPTVTLDW TKSKSSSESK NVNPKTESPE VPQVLVEQMA TSLTKDPNFR AALVAAISGK 300 MLHNNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-20 | 158 | 221 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-20 | 158 | 221 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN22402.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ322695 | 0.0 | DQ322695.1 Glycine max WRKY27 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237392.2 | 0.0 | WRKY transcription factor 27 | ||||
Refseq | XP_028205063.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 3e-98 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0B2QRU5 | 0.0 | A0A0B2QRU5_GLYSO; Putative WRKY transcription factor 40 | ||||
STRING | GLYMA15G00570.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-83 | WRKY DNA-binding protein 40 |