PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22335.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 230aa    MW: 26575.1 Da    PI: 9.4656
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22335.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-2090149357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 +R+++t+eq+ +Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  KHN22335.1  90 TRWNPTQEQIGILEMLYKGgIRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 149
                 7*****************99**************************************97 PP
2Wus_type_Homeobox115.82e-3790151465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq
         KHN22335.1  90 TRWNPTQEQIGILEMLYKGGIRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 151
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.89685150IPR001356Homeobox domain
SuperFamilySSF466891.67E-1286157IPR009057Homeodomain-like
SMARTSM003893.5E-687154IPR001356Homeobox domain
CDDcd000865.28E-590151No hitNo description
PfamPF000462.3E-1890149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-791149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGSMKVHQFT RGLIWEHEPF LTLGCKRLRP LAPKLPNTQT NTIPTTPSVP FDLKSFIRPE  60
SGPRKPVSSD DSKKDPPSPQ GQVETHPGGT RWNPTQEQIG ILEMLYKGGI RTPNAQQIEQ  120
ITVQLGKYGK IEGKNVFYWF QNHKARERQK QKRNSLAFSH SPRTHTIHSI VTLETTRGEV  180
VERDHEEDSP YKKKCRRWVF ECLEEQNMSS ACEQEEHRTL ELFPLHPEGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965280.0BT096528.1 Soybean clone JCVI-FLGm-15J7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241420.11e-170uncharacterized protein LOC100781015
RefseqXP_028234920.11e-170WUSCHEL-related homeobox 4-like
SwissprotQ6X7J93e-72WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A445K4N61e-169A0A445K4N6_GLYSO; WUSCHEL-related homeobox 4
TrEMBLC6TFY41e-169C6TFY4_SOYBN; Uncharacterized protein
STRINGGLYMA06G04470.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.16e-70WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  4. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  5. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  6. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]