PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22026.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 462aa    MW: 51223.6 Da    PI: 7.1658
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22026.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17136185155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KHN22026.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                 78*******************......55************************997 PP
2AP241.33.9e-13228278155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  KHN22026.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 278
                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-16136194IPR016177DNA-binding domain
PfamPF008475.2E-9136185IPR001471AP2/ERF domain
CDDcd000184.87E-11137195No hitNo description
SMARTSM003803.3E-32137199IPR001471AP2/ERF domain
PROSITE profilePS5103217.794137193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17137194IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-17228287IPR016177DNA-binding domain
CDDcd000182.38E-25228288No hitNo description
PfamPF008471.2E-8228278IPR001471AP2/ERF domain
PROSITE profilePS5103215.527229286IPR001471AP2/ERF domain
SMARTSM003802.5E-32229292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-16229286IPR001471AP2/ERF domain
PRINTSPR003674.8E-6230241IPR001471AP2/ERF domain
PRINTSPR003674.8E-6268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLDLNLNAEW TDSFSNVRDF EFLRGECGRV RDEDSDSTRA ADDVYTTFNF DILKVEGANG  60
FVTKELFPVM SEGAKGHATS SFSGTNGFVD LSFDGDGGNT SEMKMLQPQN QNQTQTRTQT  120
QQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGVDADI NFNLSDYEDD LKQMQNLSKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE AVTNFEPSTY EGELKSAAIN  300
EGGSQNLDLN LGIATPGPPK ENWGQLQFPS FPYNTHGGRS SMMETNVSSG IGNPSLKRMV  360
ATEDRPSLWN GMSPNFFPNG ERAERIGVDP SNGLPNWAWQ THGQVNATPV PTFSAAASSG  420
FSISATFPSA AIFPTSSMNS IPQSLCFTSS SMPTRNASEY YY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189749.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC31e-108AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A445I1U10.0A0A445I1U1_GLYSO; Ethylene-responsive transcription factor RAP2-7 isoform B
STRINGGLYMA12G07800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-116related to AP2.7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]