PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21940.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 1013aa    MW: 115246 Da    PI: 7.811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21940.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.81.3e-1082375971359
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl c + v ++d + a++lL+++++++sp gd+ qRla+yf+++L+arl + +s+   +++  ++++ + +e l+a+++f  ++P+ kf+++ aN
  KHN21940.1 237 LRNLLLMCSQSVYANDIRTANELLKQIRQHSSPVGDASQRLAHYFANGLEARLIGAGSGAIGTFSFVSSKRITAAEFLKAYQVFLSATPFKKFTYFFAN 335
                 6899*********************************************************************************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 q+I++a++++e +HiiD++i +G+QWp L++ L++R++gpp+lRiTg++ p+sg   +e++eetg+rLa+++++ +vpfe+++++++++e+++le+L++
  KHN21940.1 336 QMIVKAAAKAEIIHIIDYGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQSGfrPTERIEETGHRLANYCKRYNVPFEYHAIASRNWETIKLEALKI 434
                 *****************************************************9*****************************9999************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesv.sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 +++E +aVn++++ ++lldes+ +++s+r+++L+l+++++P++++ +  + +++++ F++rf eal +ysa++d++++ + +e+e+r+++E ellgre+
  KHN21940.1 435 ERNELVAVNCHMRFEHLLDESTiEVNSPRNAFLHLIRKINPDIFTQIIINGSYDAPFFATRFREALFHYSAIYDMFDTVITSENEWRMTIESELLGREV 533
                 ******************997625666************************************************************************ PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                 +nv+aceg+er++r et+++W+ r ++aGFk++pl+e+ +++ ++ l++++ d + ++e++++++
  KHN21940.1 534 MNVIACEGSERVQRPETYKQWQVRNTRAGFKQLPLNEELMAKFRSKLKEYHRD-FVLDENNNWML 597
                 ***************************************************66.********997 PP
2GRAS505.3e-1680087426105
        GRAS  26 rlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
                 ++++++sp+gd++qRla+yf+++L+arl++  +++++ l++++++    +e l+a+++f  +sP+ k++++ aN++I++a
  KHN21940.1 800 TIRQHSSPSGDALQRLAHYFVNGLEARLVG--EGMFSFLSSKRSP---AAEFLKAHQVFLSASPFKKLTYFFANKMIMKA 874
                 699**************************9..9999999999998...9****************************987 PP
3GRAS26.57.6e-09876927137187
        GRAS 137 egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrle 187
                 +gpp+lRiTg++ p++g + +e  etg+ La+++++  vpfe+n++++++++
  KHN21940.1 876 GGPPKLRITGIDFPQPGfHPTEKIETGRHLANYCKRYSVPFEYNAIASRKWN 927
                 79**************99999999*********************8777765 PP
4GRAS20.74.4e-07928977320369
        GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                 ++aGFk++pl+e+  ++ +  lrk +++ + ++e++++++++Wk++ Lvs
  KHN21940.1 928 MKAGFKKLPLNEELLAKFRNELRKWYQRDFVLDEDKNWMLQCWKGHILVS 977
                 589***********************999*****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.412211593IPR005202Transcription factor GRAS
PfamPF035144.6E-106237597IPR005202Transcription factor GRAS
PROSITE profilePS5098512.1267481013IPR005202Transcription factor GRAS
PfamPF035141.8E-13800874IPR005202Transcription factor GRAS
PfamPF035142.6E-6876927IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MEPNIPRGAE EQSTAYLMED SDFSETAKFI SQILMEENID QRPLYDTLTL QVTEKSFYDA  60
LTGNIPLSPN PNQHPLLLSP QAQTTITEHG LSDLDSSLQQ NLFNDADSVS HFKRGLEEAT  120
KFLPPVSNLV TGQYPNGEQP INTFEGNSYG FQSRKNHERE EIDTREEEHE GRGHKQSALS  180
LVDETDLSDA IDRVFLSVEN VCIEHSSLQN GALKPKAPEV GKGRSKKQGR KKETVDLRNL  240
LLMCSQSVYA NDIRTANELL KQIRQHSSPV GDASQRLAHY FANGLEARLI GAGSGAIGTF  300
SFVSSKRITA AEFLKAYQVF LSATPFKKFT YFFANQMIVK AAAKAEIIHI IDYGILYGFQ  360
WPILIKFLSN REGGPPKLRI TGIEFPQSGF RPTERIEETG HRLANYCKRY NVPFEYHAIA  420
SRNWETIKLE ALKIERNELV AVNCHMRFEH LLDESTIEVN SPRNAFLHLI RKINPDIFTQ  480
IIINGSYDAP FFATRFREAL FHYSAIYDMF DTVITSENEW RMTIESELLG REVMNVIACE  540
GSERVQRPET YKQWQVRNTR AGFKQLPLNE ELMAKFRSKL KEYHRDFVLD ENNNWMLQAT  600
SVKLMIFTPS TLKLPLNPLR TFACYSIHNI ASGFSYRSEK KKRVLIGENR YVFSESLVEG  660
FLGNLQGNEG SLNEGSIAAK PRESETYIML SSSGKFASII TLKSIFVLLR KTKKNGRKNH  720
EREDIDTRKE EEEEERRSNK QSALNLVDES DLSDAFDRMV MLSVENVCNE HCSLQSETMK  780
AVEASGGKSL PKKQGTKDET IRQHSSPSGD ALQRLAHYFV NGLEARLVGE GMFSFLSSKR  840
SPAAEFLKAH QVFLSASPFK KLTYFFANKM IMKAEGGPPK LRITGIDFPQ PGFHPTEKIE  900
TGRHLANYCK RYSVPFEYNA IASRKWNMKA GFKKLPLNEE LLAKFRNELR KWYQRDFVLD  960
EDKNWMLQCW KGHILVSGFD ILALAVAADF ALPSGAMMKI EPCSAIITYV ARN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-502265688334Protein SCARECROW
5b3h_A1e-502265687333Protein SCARECROW
5b3h_D1e-502265687333Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619523.10.0scarecrow-like protein 31
RefseqXP_025980192.10.0scarecrow-like protein 31
RefseqXP_028187655.10.0scarecrow-like protein 31
RefseqXP_028187656.10.0scarecrow-like protein 31
SwissprotQ3EDH01e-170SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A445I1890.0A0A445I189_GLYSO; Scarecrow-like protein 31
STRINGGLYMA11G14700.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.11e-159GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]