PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21793.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 295aa    MW: 33185.7 Da    PI: 8.949
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21793.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30178236259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p+++++tY+g+H h+
  KHN21793.1 178 ADLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCMARKQVERSNTEPDMFVVTYTGDHSHP 236
                 699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-30163238IPR003657WRKY domain
SuperFamilySSF1182902.75E-26172238IPR003657WRKY domain
PROSITE profilePS5081132.524172238IPR003657WRKY domain
SMARTSM007746.9E-37177237IPR003657WRKY domain
PfamPF031061.0E-25179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAEDWDLFAI VRSCQSATTT IPQTTTNNTS SPTSTIKEEI YDAFSSPNIV PPNTNEFQEL  60
HQLFTPFNPT NNTSAPGINP NSPYFAEQES QQISEHLHIW PHFVPEQSST PSFNRFHDQQ  120
QQQQINQLQA LQKHEFRLPQ NISPTVSPNA QPQTPKSRKR KSQQKKMVCH VTADNLSADL  180
WAWRKYGQKP IKGSPYPRNY YRCSSSKGCM ARKQVERSNT EPDMFVVTYT GDHSHPRPTH  240
RNSLAGSTRS KTLVTNPPPS PGSLSCFQAT PFSSSSSSPP HSPTSPEEDP RKPPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-21161239280Disease resistance protein RRS1
5w3x_D5e-21161239280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21793.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195530.0EU019553.1 Glycine max WRKY2 (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535592.10.0probable WRKY transcription factor 27
RefseqXP_028183866.10.0probable WRKY transcription factor 27
TrEMBLA0A0B2QPK30.0A0A0B2QPK3_GLYSO; Putative WRKY transcription factor 27
STRINGGLYMA10G37460.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-52WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]