PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21689.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 388aa    MW: 44723.5 Da    PI: 7.0271
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21689.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind59.11.2e-18671495102
                   HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--.HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsn.faSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                    ++e++ed++++ ++ ws++ +sfv++d++ef+k++LpkyFkh+n f+SF       gF+kv+ +          w++ ++ F+ gkk+ll++i+r+
    KHN21689.1  67 SMFEMVEDPHTNPIVLWSQTCDSFVIWDSHEFSKTLLPKYFKHNNnFSSF-------GFRKVDLPG---------WKYINEGFQGGKKHLLKNIRRR 147
                   579****************************************8626665.......*****9998.........*********************9 PP

                   XX CS
  HSF_DNA-bind 101 ks 102
                   ++
    KHN21689.1 148 SK 149
                   86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000562.3E-56487IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004156.2E-2565147IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.62E-1867147IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-1867147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.7E-1667147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-5102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGGEEVARVK AELFNDRKSD CNDDEVLSES KDSGVATEKV TMRTKTHTVK EEMDDCAVNW  60
SSSSSTSMFE MVEDPHTNPI VLWSQTCDSF VIWDSHEFSK TLLPKYFKHN NNFSSFGFRK  120
VDLPGWKYIN EGFQGGKKHL LKNIRRRSKC NKLHQGAFNM MKPDVDSEVE KLKKDQNILK  180
VEILKLRQQQ ENSHVQLTNV QERIRCAEMK QFQMMYFLTR MARRPAFVEQ LVHKIRRKRE  240
IDGNEMVKRP RLMGNPCHVP FPKTMETTPN FDYRHQQGHK QFATLQSELN VTEVNSSRME  300
HPTPSPLEDE LGNSLQGLRA HGCSRARAQD ASSSAYHVMS EKLMRENSIV DEELDVNDSN  360
IYLELEDLIT KPTDWSVGSA SGLVEQTS
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549228.10.0heat stress transcription factor A-2
RefseqXP_028209405.10.0heat stress transcription factor A-2-like
SwissprotQ9LVW24e-50HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLA0A0B2QND70.0A0A0B2QND7_GLYSO; Heat stress transcription factor A-9
STRINGGLYMA17G06160.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.14e-52heat shock transcription factor A9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]