PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21320.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 341aa MW: 38251.9 Da PI: 9.9

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21320.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.2	7.6e-17	53	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + ++ + ss++p++++l+ KHN21320.1 53 EWSEGAVTTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATTADA----SSSWPLYSRLD 138 5***********************************87777777888999*************999984....779***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-20	51	139	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEDNNNNNNN KAEKQQDDSS HHHPSLLLPN PNHSTTINNN TKEDHHHRLK RDEWSEGAVT 60 TLLEAYEAKW VLRNRAKLKG HDWEDVAKHV SARANSTKSP KTQTQCKNKI ESMKKRYRSE 120 SATTADASSS WPLYSRLDVL LRGTAPISSS LSPPPIAAAR PIIAAPSSQS PHNQALVLLE 180 PPPSVAPPPI AIAQNSYGSN GVERLLAKED GIGAKSSEHV SNKNPMDSDS STPALYSEKD 240 KVRCNKRKMK SENNKRRRNN NNEDMEIVES IRWLAEMVVR SEQTRMDTMK EIERMRVEAE 300 AKRGEMELKR TEIIANTQLE IAKIFASVNK GVDSSLRIGR S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-100	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539298.1	0.0	trihelix transcription factor ASIL2
Refseq	XP_028187664.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A0B2QJ17	0.0	A0A0B2QJ17_GLYSO; Trihelix transcription factor ASIL2
TrEMBL	I1LLG2	0.0	I1LLG2_SOYBN; Uncharacterized protein
STRING	GLYMA11G25570.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-91	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]