PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21163.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 484aa    MW: 55107.4 Da    PI: 8.5593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21163.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1371.2e-4261382128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                 ppGfrF Pt+eelv +yL++k+eg++  + +++vi+ +di+ vePw+Lp+     +++++++w+fFs+ ++++++g r++r+t+ gyWkatg+   v+s
  KHN21163.1   6 PPGFRFFPTEEELVGFYLHNKLEGQRnaIAIDRVIPVIDINGVEPWNLPTlageLCRGDTEQWFFFSPGQERETRGGRPSRTTACGYWKATGSPCYVYS 104
                 9************************977777789***************545654445777************************************** PP

         NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++++++g+kk++vfykg+ap g+kt+W m+eyr+
  KHN21163.1 105 SHNKVIGVKKSMVFYKGKAPMGTKTKWKMNEYRA 138
                 ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-444162IPR003441NAC domain
PROSITE profilePS5100544.9295164IPR003441NAC domain
PfamPF023659.4E-236137IPR003441NAC domain
Gene3DG3DSA:3.30.450.502.6E-37230337IPR010908Longin domain
SuperFamilySSF643569.16E-31233348IPR011012Longin-like domain
PROSITE profilePS5085931.649237341IPR010908Longin domain
SMARTSM012706.6E-29258340IPR010908Longin domain
PfamPF137744.6E-23260338IPR010908Longin domain
Gene3DG3DSA:1.10.3840.104.5E-30338365IPR001388Synaptobrevin
PROSITE profilePS5089213.888390450IPR001388Synaptobrevin
PRINTSPR002195.5E-9395414IPR001388Synaptobrevin
Gene3DG3DSA:1.10.3840.104.5E-30400474IPR001388Synaptobrevin
PfamPF009574.8E-26400475IPR001388Synaptobrevin
SuperFamilySSF580381.47E-15400452No hitNo description
CDDcd158433.95E-21401448No hitNo description
PROSITE patternPS004170408427IPR001388Synaptobrevin
PRINTSPR002195.5E-9415434IPR001388Synaptobrevin
PRINTSPR002195.5E-9451470IPR001388Synaptobrevin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016192Biological Processvesicle-mediated transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEEDYPPGFR FFPTEEELVG FYLHNKLEGQ RNAIAIDRVI PVIDINGVEP WNLPTLAGEL  60
CRGDTEQWFF FSPGQERETR GGRPSRTTAC GYWKATGSPC YVYSSHNKVI GVKKSMVFYK  120
GKAPMGTKTK WKMNEYRAIH VPSQSTPATL HLTCEFSLCR VYVISGSFRA FDRRPLEKEG  180
AESRVHRIEN NFGGARAHQT CPHSQMLEAG ESSSTKWDLE AENVLPNLLP MAIFYALVAR  240
GTVVLAEFSA VTGNTGAVSR RILEKLPAES DSRLCFSQDR YIFHILRSDG ITYVCMANDT  300
FGRRIPFSYL EDIQMRFMKN YSRVANYAPA YAMNDEFSRV LHQQMEFFSS NTSADTLNRV  360
RGEVGEASAW LIPRSDRQEC FANMFLKSIL LDFGLYRCCN IRTIMVDNIE KILERGDRIE  420
LLVDKTATMQ DSAFHFRKQS KRLRRALWMK NFKLLALLTC LIVVVLYLII AACCGGISLP  480
SCRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4b93_A1e-382304531189VESICLE-ASSOCIATED MEMBRANE PROTEIN 7
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the targeting and/or fusion of transport vesicles to their target membrane. {ECO:0000305|PubMed:11115874}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21163.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988990.0BT098899.1 Soybean clone JCVI-FLGm-13A2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FMR51e-128VA714_ARATH; Vesicle-associated membrane protein 714
TrEMBLA0A371HE800.0A0A371HE80_MUCPR; Vesicle-associated membrane protein 714 (Fragment)
TrEMBLA0A4D6LI410.0A0A4D6LI41_VIGUN; Vesicle-associated membrane protein 7
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-73NAC domain containing protein 90
Publications ? help Back to Top
  1. Sanderfoot AA,Assaad FF,Raikhel NV
    The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors.
    Plant Physiol., 2000. 124(4): p. 1558-69
    [PMID:11115874]
  2. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]
  3. Uemura T, et al.
    Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells.
    Cell Struct. Funct., 2004. 29(2): p. 49-65
    [PMID:15342965]
  4. Uemura T,Sato MH,Takeyasu K
    The longin domain regulates subcellular targeting of VAMP7 in Arabidopsis thaliana.
    FEBS Lett., 2005. 579(13): p. 2842-6
    [PMID:15876431]
  5. Leshem Y, et al.
    Suppression of Arabidopsis vesicle-SNARE expression inhibited fusion of H2O2-containing vesicles with tonoplast and increased salt tolerance.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(47): p. 18008-13
    [PMID:17101982]
  6. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]