PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 531aa MW: 59610.6 Da PI: 9.6471 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00077 | 7 | 29 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ksF+ +L HirtH KHN20529.1 7 YVCKYCSKSFPCGKSLGGHIRTH 29 9**********999999999998 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.0011 | 478 | 500 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k F++ L H r+H KHN20529.1 478 HECPICYKIFKSGQALGGHKRSH 500 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.83E-9 | 5 | 29 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-5 | 5 | 29 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.72 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.2E-7 | 7 | 30 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.057 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.83E-9 | 118 | 145 | No hit | No description |
PROSITE profile | PS50157 | 9.723 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 123 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.4E-7 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.078 | 478 | 500 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.1E-11 | 478 | 500 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 478 | 500 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 480 | 500 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MEERKKYVCK YCSKSFPCGK SLGGHIRTHM MTEERNNNNN VNVVVDGADD KDNINRFIKL 60 GGTVMRNNNN KKRDLSWCED SNNNPIYGLR ENPKKTMRFV HSSGGAANAN NNEQQQQNKE 120 DKRFCKECGK GFPSLKALCG HMACHSEKEK RTTATTTIKF EEKLVRDSHS DTETSTHPRR 180 SKRMRVKKTI KLSNHNNPFS FSSSPSSSGV VPLVNNGSSP VSEVEQEEQE EVARCLMLLS 240 RDSGSFNFKS GRFASVTEFS DNNSVILEAK SSSPDTLIGV ISYGNNNNNN NFVSNNNHAY 300 DLVEKKLLKV KNIKFKSVEF GASDNYSGAR VFRYGPKTKM VDSDFSNDEL KRSKLGDKSS 360 KYTASVVKKL VMEDLDYDRT YGGTTRKFDS RKRGNYDLVG VSSKNGTKGW KYECFEGERD 420 NNSSYEYSID DESDENSSET ESFPAPGSHR KSKALNGKKC TTNAKKKKLK PSKKSKDHEC 480 PICYKIFKSG QALGGHKRSH FIGGSEENTV LIKQVVPNFL IDLNLPAPVD E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20529.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028221391.1 | 0.0 | ras guanine nucleotide exchange factor Q-like | ||||
TrEMBL | A0A0B2QJY1 | 0.0 | A0A0B2QJY1_GLYSO; Zinc finger protein ZAT4 | ||||
STRING | GLYMA20G03240.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 7e-37 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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