PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20337.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 176aa    MW: 19531.9 Da    PI: 7.3455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20337.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-095393954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r RR+ri ++f  L++++P        K++ +++Le A++Y+k L
  KHN20337.1 53 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEGAIHYVKFL 93
                699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7864493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-115097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-125097No hitNo description
SMARTSM003531.2E-115099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-1351119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-75393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MECISNPTPC EGSSSSSKHS NKSNKEKKGV RKSNKGGGGG GVRLSTDPQS VAARERRHRI  60
SDRFKILQSM VPGGSKMDTV SMLEGAIHYV KFLKTQILLH QALIDFVEVD HHESPLFLPS  120
EYNNFPDEHS ISLQQNPSSS VSVHSHHNQQ SLPQLPLAQC YFQGEEDFNT FDAMPL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20337.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982425.11e-128transcription factor bHLH140-like
TrEMBLA0A0B2QKU01e-127A0A0B2QKU0_GLYSO; Transcription factor LAX PANICLE
STRINGGLYMA0732S00200.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.13e-29APRATAXIN-like
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]