PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20164.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 379aa    MW: 42913.6 Da    PI: 6.4528
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20164.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer378.1e-1246752858
  ZF-HD_dimer 28 fmpsegeegtaaalkCaACgCHRnFHRreve 58
                 f+p  geegt +alkC  C+CHRnFHR+e+ 
   KHN20164.1 46 FLPL-GEEGTLDALKCLVCNCHRNFHRKETP 75
                 5665.889********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.9E-114674IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-84674IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.2E-18136210IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27139210IPR009057Homeodomain-like
TIGRFAMsTIGR015658.1E-22149205IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEFKQHEETE LRMLAATASY NAFGIPPSSQ GEEEPVAAAI LVAIPFLPLG EEGTLDALKC  60
LVCNCHRNFH RKETPNDTYL VPYYHHSPLP LAAYYGEQVG YPHVQGQQCT TLALPSRSRG  120
SGGAQSSRED MEAVSDPTSG ATPHGGSSKK RFRTRFTQEQ KGKMLAFAEK LGWRIMKHDE  180
SVVQEFCAQT NIQPRVLKVW VHNNKHTLNK VFDGDAQVSF PTSKIQYVRQ AHDIFLAWPA  240
NLGKCVSHED SRLTPSKVFE PIERLNNVAT DDPLRQLIRT LYDIYEKPVE LLWDGTKFGI  300
PNVDASFFLT YSYVNEIISG EKCLNIAILQ LWMMFMDEWS SSLGHGSVYG FLEPQSIHNA  360
KERHAECQQY IETWVKESQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221482071675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350420.0AC235042.1 Glycine max strain Williams 82 clone GM_WBa0093J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219962.11e-143zinc-finger homeodomain protein 2-like
TrEMBLA0A0B2QIW00.0A0A0B2QIW0_GLYSO; ZF-HD homeobox protein
STRINGGLYMA02G31190.21e-130(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-42homeobox protein 22
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]