PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 42716 Da PI: 7.3211 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.7e-52 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeelv++yL+ kv + +++ ++evd++++ePw+Lp +k +e+ewy Fs rd+ky+tg r+nrat +gyWkatgkdkev+s+ +g+ KHN20086.1 22 LPPGFRFHPTDEELVTFYLASKVFNGTFSN-VKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSAsSGT 119 79*************************888.45***************8888899**************************************997788 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l g+kktLvfykgrap+gekt+Wvmheyrl KHN20086.1 120 LLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-62 | 17 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.774 | 22 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-27 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MLAMEELLCE LSDHERRNEQ GLPPGFRFHP TDEELVTFYL ASKVFNGTFS NVKFAEVDLN 60 RCEPWELPDV AKMGEREWYL FSLRDRKYPT GLRTNRATGA GYWKATGKDK EVYSASSGTL 120 LGMKKTLVFY KGRAPRGEKT KWVMHEYRLV LDAHFSLPHT HPSKEEWVIC RIFHKSGEKR 180 SPVLQVHGHS DASSSPRESA LPPLLASPSC FTFDPESQSQ SSSHSQRDFQ SPVLIHHQDQ 240 NGHSHNPRLF PLEITNARNH PSSFSDLFFK PLQQNCTLKT NEQTILPKVT KTEDATFYDQ 300 YHQLLDDHNN MRWVNKLNQN PSNLLNTFPF EVDAGLMAFS GAANAQVKDI STSTPFNRVG 360 LQQTLDSWPL AQHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-51 | 22 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-51 | 22 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-51 | 22 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-51 | 22 | 175 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-51 | 22 | 175 | 20 | 168 | NAC domain-containing protein 19 |
3ulx_A | 6e-51 | 19 | 178 | 12 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 6e-51 | 22 | 175 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-51 | 22 | 175 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20086.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-98 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527632.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Refseq | XP_028234592.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-93 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A445K3B6 | 0.0 | A0A445K3B6_GLYSO; Protein CUP-SHAPED COTYLEDON 3 isoform A | ||||
TrEMBL | K7KSH7 | 0.0 | K7KSH7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G01741.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7888 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 2e-95 | NAC family protein |