PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19135.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 575aa    MW: 62955.9 Da    PI: 7.409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19135.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1061.9e-33234291260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  KHN19135.1 234 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 291
                 8****************************************.***************85 PP
2WRKY106.71.2e-33405463159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  KHN19135.1 405 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 463
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28227292IPR003657WRKY domain
SuperFamilySSF1182901.26E-25232292IPR003657WRKY domain
SMARTSM007741.4E-36233291IPR003657WRKY domain
PfamPF031068.9E-26234290IPR003657WRKY domain
PROSITE profilePS5081123.778234292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-38390465IPR003657WRKY domain
SuperFamilySSF1182901.19E-29397465IPR003657WRKY domain
PROSITE profilePS5081138.147400465IPR003657WRKY domain
SMARTSM007741.2E-39405464IPR003657WRKY domain
PfamPF031065.0E-26406463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MASSSGSLDT SASANSFTNF TFSTHPFMTT SFSDLLASPL DNNKPPQGGL SERTGSGVPK  60
FKSTPPPSLP LSPPPISPSS YFAIPPGLSP AELLDSPVLL NSSNILPSPT TGAFVAQSFN  120
WKSSSGGNQQ IVKEEDKSFS NFSFQTRSGP PASSTATYQS SNVTVQTQQP WSFQEATKQD  180
NFSSGKGMMK TENSSSMQSF SPEIASVQTN HSNGFQSDYG NYPPQSQTLS RRSDDGYNWR  240
KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV ERSLDGQITE IVYKGTHNHP KPQNTRRNSS  300
NSSSLAIPHS NSIRTEIPDQ SYATHGSGQM DSAATPENSS ISIGDDDFEQ SSQKCKSGGD  360
EYDEDEPDAK RWKIEGENEG MSAPGSRTVR EPRVVVQTTS DIDILDDGYR WRKYGQKVVK  420
GNPNPRSYYK CTHPGCPVRK HVERASHDLR AVITTYEGKH NHDVPAARGS GSHSVNRPMP  480
NNASNHTNTA ATSVRLLPVI HQSDNSLQNQ RSQAPPEGQS PFTLEMLQSP GSFGFSGFGN  540
PMQSYVNQQQ LSDNVFSSRT KEEPRDDMFL ESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37234466878Probable WRKY transcription factor 4
2lex_A3e-37234466878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19135.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877000.0KM587700.1 Glycine max clone GmWRKY42 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304523.10.0WRKY transcription factor 49
RefseqXP_028200012.10.0WRKY transcription factor WRKY24-like
SwissprotQ6IEQ71e-144WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0B2QCX80.0A0A0B2QCX8_GLYSO; Putative WRKY transcription factor 33
TrEMBLI1MBH20.0I1MBH2_SOYBN; Uncharacterized protein
STRINGGLYMA14G38010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-106WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  5. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]