PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN18791.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 257aa MW: 29482 Da PI: 6.8827

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN18791.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.1	3.8e-45	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppG+rF Pt+eel+ +yL++k+eg++ ++++vi+ vdiy+++P++Lp+ + +++++w+fF++r++++a+g r++r t++gyWkatg+ ++v+s+ KHN18791.1 4 MPPGYRFYPTEEELILFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQisgeASMGDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSS 102 79**************************99***********96556422335669********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++ +g+k+t+vfy+grap+g+ktdW m+ey+ KHN18791.1 103 DNHIIGIKRTMVFYSGRAPNGTKTDWKMNEYS 134 *****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-48	3	164	IPR003441	NAC domain
PROSITE profile	PS51005	47.756	4	164	IPR003441	NAC domain
Pfam	PF02365	3.2E-22	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGNMPPGYRF YPTEEELILF YLHNKLEGER EDMNRVIPVV DIYDYNPSQL PQISGEASMG 60 DTEQWFFFIP RQESEARGGR PKRLTTTGYW KATGSPNHVY SSDNHIIGIK RTMVFYSGRA 120 PNGTKTDWKM NEYSAIKGEP SSSISNKAVP TLRKEFSLCR VYKKSKCLRA FDRRPPPRRD 180 VVSYSGAQNV EEQQKGSTLY DYHHKIMVKR STTCSPETST SSGDHDQPPL HGEETTQMDV 240 DPFLDWEKVD FFLGSEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-35	3	164	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-35	3	164	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-35	3	164	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-35	3	164	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	3	164	19	168	NAC domain-containing protein 19
3swm_B	2e-35	3	164	19	168	NAC domain-containing protein 19
3swm_C	2e-35	3	164	19	168	NAC domain-containing protein 19
3swm_D	2e-35	3	164	19	168	NAC domain-containing protein 19
3swp_A	2e-35	3	164	19	168	NAC domain-containing protein 19
3swp_B	2e-35	3	164	19	168	NAC domain-containing protein 19
3swp_C	2e-35	3	164	19	168	NAC domain-containing protein 19
3swp_D	2e-35	3	164	19	168	NAC domain-containing protein 19
4dul_A	1e-35	3	164	16	165	NAC domain-containing protein 19
4dul_B	1e-35	3	164	16	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN18791.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	4e-91	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520702.1	0.0	NAC domain-containing protein 90
Refseq	XP_028226056.1	0.0	NAC domain-containing protein 90-like
TrEMBL	A0A445LEF0	0.0	A0A445LEF0_GLYSO; NAC domain-containing protein 90
TrEMBL	I1JQ46	0.0	I1JQ46_SOYBN; Uncharacterized protein
STRING	GLYMA03G35570.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-72	NAC domain containing protein 90

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]