PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17945.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 288aa    MW: 31597.2 Da    PI: 4.35
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17945.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.35.6e-17227276326374
        GRAS 326 pvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  KHN17945.1 227 PVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWK 276
                 89***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.4E-383097IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.2E-3630103No hitNo description
PfamPF035141.9E-14227276IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:1903506Biological Processregulation of nucleic acid-templated transcription
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQSNGKAKMW EEEQQQQQQQ QQQQQQQGMD ELLAALGYKV RASDMADVAQ KLEQLEMVMG  60
CAQEDGISHL ASDTVHYDPT DLYSWVQSML TELNPEPNNN LDPSSFLIDN NNNIINSTAP  120
VFNDDSEYDL RAIPGIAAYG IAAYPPPLPQ DNHLDEIETA NNNINKRLKP SPAESADSAA  180
SEPTRHVVLV DHQEAGVRLV HTLLACAEAV QQENLKLADA LVKHVVPVHL GSNAFKQASM  240
LLALFAGGDG YRVEENNGCL MLGWHTRPLI ATSAWKLPSS SESSGLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2zsh_B3e-30111376106DELLA protein GAI
2zsi_B3e-30111376106DELLA protein GAI
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2690890.0AY269089.1 Glycine max GAI2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195811.11e-135DELLA protein GAI-like
SwissprotQ8S4W72e-57GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A445HGT01e-133A0A445HGT0_GLYSO; DELLA protein GAI1
STRINGGLYMA11G33720.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-41RGA-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]