PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17470.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 342aa    MW: 38342.1 Da    PI: 8.8206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17470.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09166213455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  KHN17470.1 166 SHSLAERVRREKISKRMTTLQRLVPGC----DKVTGKALVLDEIINYVQSLQ 213
                 8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.38E-10160217No hitNo description
SuperFamilySSF474591.18E-16160228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.421162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAAFSSQYYH SFVVDSACFS ITPPIINTSS NFLPSPHYLH NNNIQETSYS VTDNKETSCF  60
EQSSKVTISD IELSVVKNHS PETSMVVDKL EKGEQVTQKV VTRMEKKRRA RNGSSSSDPL  120
SKESTEGGKK KQKKPKEVTK DKKIGAEDPP TGYIHVRARR GQATDSHSLA ERVRREKISK  180
RMTTLQRLVP GCDKVTGKAL VLDEIINYVQ SLQNQVEFLS MKLASVNPMF FDSAMDLDTL  240
MVRPDQKLSN IASPSPLPCV AQFRPHQAIA FADTITTPTT TTNSFPTANN DGYLLDYSSS  300
LFLQGHRPNI FEDNGGQFWD VEDQRQKFLH PYRFGNNSGS FN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0949010.0BT094901.1 Soybean clone JCVI-FLGm-14F14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580621.10.0transcription factor bHLH137-like
RefseqXP_006580622.10.0transcription factor bHLH137-like
RefseqXP_028233455.10.0transcription factor bHLH137-like
RefseqXP_028233456.10.0transcription factor bHLH137-like
TrEMBLA0A0B2Q8790.0A0A0B2Q879_GLYSO; Transcription factor bHLH137
TrEMBLI1K6R80.0I1K6R8_SOYBN; Uncharacterized protein
STRINGGLYMA05G38450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-50bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]