PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17184.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 640aa    MW: 70220.9 Da    PI: 7.0182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17184.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-10272320355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  KHN17184.1 272 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 320
                 58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-16267337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-10267324No hitNo description
PROSITE profilePS5088815.485269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16270337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-7272320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MGGQENAMGF QHGNESILTC PTSGLSGANV NVSEMAISSV SIAKPSDVVN PFIASSAWDP  60
LVSLSQVQSF GGSSMVSHSE FANSNSSYPL VLDNQGISNT SHLVQYMSDS NLGGMVPKVH  120
SYASGGFSEM VGAGSFCQHR SADMANTGYP IHYNPIKEAP INGEQSQVED SIPEEEAPGS  180
APSGNRRKRG LDHNSTFSPN KNAEGDAVND SPGKASNGPK EHEKRPKGEQ NNGADVRGKQ  240
SVKQAKDNNS QSGEAPKENF IHVRARRGQA TNSHSLAERV RREKISERMR LLQELVPGCN  300
KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNFD VDRILSKDIL QSRIGHGIGA  360
YGPGINSSHT FPNGSFHGTL AGMPSTSSQF PPLPQNVLDH EFQSFYGIGY DSNTALDNLE  420
PNDHVEQVAV VLFNDMESSI LRSMRVNLLG RHRKLARNYF HWQTSLIIPE LSKVFELSKH  480
ELPIISEMSK VPELSKRELP KVSELLKPEL PKVPKLPEIS ELPKPELTKV PELPKVPESF  540
KLELTKIPEL TKVSELSKVP ELPKPTFPKV PKPELPMVLE LPKLELSKIP KIPKVPEFLK  600
VPRTFSTTNL QFELFLTLSC PQIKIGCIPV PRSCCLIDVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544498.10.0transcription factor bHLH74
RefseqXP_028200455.10.0transcription factor bHLH74-like
TrEMBLA0A4D6MCG50.0A0A4D6MCG5_VIGUN; Phytochrome-interacting factor 3
STRINGGLYMA14G10180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-74bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]