PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17141.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 339aa    MW: 36611.3 Da    PI: 6.6466
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17141.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  KHN17141.1 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-763331IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.583239275IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-16239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.7E-15243276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-14243302No hitNo description
CDDcd002028.40E-14244301No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15245278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVGPNFMDEI DCGSFFDHID DLLDFPATLP SVSAGNSNSL ASIWPSESDS FPASDSVFSG  60
NSASDLSAEL SVPYEDIVQL EWLSNFVEDS FCGGSLTMNK VEEPSCTTKE DSVNTQFHTS  120
SPVSVLESSS SCSGGKTLPP RSPEIYIPVP CGRARSKRPR PATFNPRPAM NLISPASSFV  180
GENMQPNVIS SKASSDSENF AESQLVPKMP KLASGEPKKK KKVKVPLPVA PADNNQNASQ  240
PVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FCPSVHSNSH  300
KKVLEMRCRG FDKSGFAINS AASPELIPNT NSSLTLEYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
2216222PKKKKKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17141.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589425.10.0GATA transcription factor 8
RefseqXP_006589426.10.0GATA transcription factor 8
RefseqXP_025979937.10.0GATA transcription factor 8
RefseqXP_028185056.10.0GATA transcription factor 8-like
RefseqXP_028185057.10.0GATA transcription factor 8-like
TrEMBLA0A445IQI40.0A0A445IQI4_GLYSO; GATA transcription factor
TrEMBLK7LKL80.0K7LKL8_SOYBN; GATA transcription factor
STRINGGLYMA10G35470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-41GATA family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]