PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16817.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 625aa    MW: 70232.3 Da    PI: 6.7829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16817.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.8e-15427473455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A++Y+k+L+
  KHN16817.1 427 NHVMSERRRRAKLNERFLTLRSMVPSiS------KDDKVSILDDAIDYLKKLE 473
                 799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.3E-506185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.034423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18426482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.74E-15426477No hitNo description
Gene3DG3DSA:4.10.280.104.3E-18427482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-12427473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.017557625IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MVPENLKKQL ALAVRSIHWS YAIFWTDSTT QPGVLSWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELFKSLKTV EVTPQTKRPS AAALSPEDLT DAEWYYLVCM SFIFNIGQGL  120
PGRTLAKGQP IWLNNAHSSD CKIFSRSLLA KTVVCFPFRE GVIELGTTEQ VPEDLSVIEL  180
IKTSFLNSLH ANVPNKSVAT LKSRNQEGLS YAAFDHNDYN VKSIPEVGYE IANTTSPDGS  240
SNAFQANQPL DETFMIESIT NGTSQVQNWQ VIDDELSNCV HNSMNSSDCI SQTFACPENI  300
ASAPKSNNPS DPCARNFQKC NNPKMTLVDP RSDDLHYQRV LSTLIKSSDQ LLMGMHLQKF  360
PQESSFVSWR KEQPMDCKWP RAGTSQKLLK KVLFEVPQMH LDGLHESQEE NDYKEGMRVE  420
ADENGMNHVM SERRRRAKLN ERFLTLRSMV PSISKDDKVS ILDDAIDYLK KLERRVKELE  480
AHRVVTDIET GTRRSPQDTV ERTSDHYFRK NNNGKKPGMK KRKACGVDET EKEINSDALK  540
GSYANDVTVS TSDNEIVIEL KCPSKAGRLL EIMEAINSFN IDFSSVQSTE ADGNLYLTIK  600
SVLTGPSVAT TKRIKQALQK LASKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1341857192Transcription factor MYC3
4rqw_B2e-1341857192Transcription factor MYC3
4rru_A2e-13417346219Transcription factor MYC3
4rs9_A2e-1341857192Transcription factor MYC3
4ywc_A2e-13417346219Transcription factor MYC3
4ywc_B2e-13417346219Transcription factor MYC3
4yz6_A2e-1341857192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242567.10.0transcription factor EGL1-like
TrEMBLA0A445J8F50.0A0A445J8F5_GLYSO; Transcription factor GLABRA 3 isoform A
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-177bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]