PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15898.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 465aa    MW: 51771.1 Da    PI: 6.3971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15898.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12287332454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  KHN15898.1 287 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 332
                 799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-4526199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.609283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-17284345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-10287332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.90E-14287337No hitNo description
Gene3DG3DSA:4.10.280.104.8E-16287343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-15289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSLSQE NPTPTLQQKL QFLLQSQPDW WVYAIFWQAS HDDNGNLYLS  60
FGEGHFQGTK ETSPKSLTIP TKNKFLMKTP TNDNINDAEW FYVMSLTRSF AVNNNSSSNS  120
TSCSSSSSLP GKSFALGSVL WQNNRHELQF YNCERSNEAH VHGIETLICI PTQNGVVEMG  180
SYDTIKQNWN LVQHVKSLFH TSPDPVTIQI LDDHTISFAD IGIVAGIQET KKRKQITQTA  240
PSKNDNYVDS EHSDSDCPTL PTATTPTASE PKKRGRKPVL GRETPINHVE AERQRREKLN  300
HRFYALRAVV PNVSRMDKAS LLSDAVAYIN ELKAKIEDLE SQQPRDSNKK MKTEMTDTLD  360
NQSATTTSTV VDQSGSGSRL GLGPLGLEVD VRIVGPDAMV RVQSENVNHP GARLMGALRD  420
LEFQVHHASM SCVNDLMLQD VVVKLPNGMR SEESLKSAII MRLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-27252008193Transcription factor MYC3
4rqw_B1e-27252008193Transcription factor MYC3
4rs9_A1e-27252008193Transcription factor MYC3
4yz6_A1e-27252008193Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15898.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311090.0KT031109.1 Glycine max clone HN_CCL_177 bHLH transcription factor (Glyma07g05740.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028205830.10.0transcription factor MYC2-like
TrEMBLA0A445GD470.0A0A445GD47_GLYSO; Transcription factor bHLH14
STRINGGLYMA16G02320.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-71bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]