PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN15545.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22481.8 Da    PI: 9.0776
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN15545.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-181151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i+n ++r+ tf kR+ng+lKK +E+S+LC++e++ ii+s++
  KHN15545.1 11 ISNPTKRKATFKKRKNGLLKKVSEISTLCATEACAIIYSPD 51
                99*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-20161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.236149IPR002100Transcription factor, MADS-box
CDDcd002661.03E-28284No hitNo description
PRINTSPR004041.6E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-23394IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MARKKVDITY ISNPTKRKAT FKKRKNGLLK KVSEISTLCA TEACAIIYSP DEPAKPEVWP  60
SDQGVKSVIS SFREVSKLEQ SKKMLCQESL LRKNLIKAQE QLKKLKTENR KKEMSLLMSQ  120
YFTIENNLEN SNTVDLNDNS FLADKNLEEI RMKIDMHQPQ EVAPTVEKGG ETMYLGDQGL  180
VNYHVQGPET NGDAMPNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDITYISNPTKRKATFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN15545.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520978.11e-146agamous-like MADS-box protein AGL80
RefseqXP_028223774.11e-146agamous-like MADS-box protein AGL80
TrEMBLA0A0B2Q2I81e-144A0A0B2Q2I8_GLYSO; Agamous-like MADS-box protein AGL80
TrEMBLI1JM471e-144I1JM47_SOYBN; Uncharacterized protein
STRINGGLYMA03G19880.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-37AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]