PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN15200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27546.4 Da PI: 9.1271 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA E+SvLCda+va+i+fs++gkl +ys+ KHN15200.1 9 KRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLLDYSN 59 79**********************************************985 PP | |||||||
2 | K-box | 100.6 | 2.2e-33 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ + ++ +e++ e++kLk+++e Lqr+qR+++GedL+sL+l+ Lq+LeqqL+++lk+iRs+Kn+ + e+i+elqkk + l+e+n+ L+kk++e KHN15200.1 78 RQLVGDDQPPNENWVIEHEKLKARVEVLQRNQRNFMGEDLDSLNLRGLQSLEQQLDSALKHIRSRKNQAMNESISELQKKDRTLREHNNLLSKKIKE 174 555666677789**********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.978 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-31 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.85E-40 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-27 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.221 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRSGLLK KAREISVLCD ADVALIVFST KGKLLDYSNQ 60 PCTERILERY ERYSYAERQL VGDDQPPNEN WVIEHEKLKA RVEVLQRNQR NFMGEDLDSL 120 NLRGLQSLEQ QLDSALKHIR SRKNQAMNES ISELQKKDRT LREHNNLLSK KIKEKEKELT 180 PQEQEGLQNN MDVSSVLVTQ PLESLTIGGS PEVKSNEETP TSCRPKTILP PLMPLPTNE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:28586421). Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:28586421). Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND. Represses SAUR10 expression in stems and inflorescence branches (PubMed:28586421). {ECO:0000269|PubMed:10648231, ECO:0000269|PubMed:15035986, ECO:0000269|PubMed:28586421, ECO:0000269|PubMed:9502732}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN15200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Dramatically up-regulated upon the transition from vegetative to reproductive development. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031177 | 0.0 | KT031177.1 Glycine max clone HN_CCL_28 MADS transcription factor (Glyma05g07380.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304506.1 | 1e-174 | MADS-box protein FULc | ||||
Refseq | XP_028231275.1 | 1e-174 | truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Swissprot | Q38876 | 1e-100 | AGL8_ARATH; Agamous-like MADS-box protein AGL8 | ||||
TrEMBL | A0A445KIS5 | 1e-173 | A0A445KIS5_GLYSO; Agamous-like MADS-box protein AGL8-like isoform C | ||||
TrEMBL | I1K153 | 1e-173 | I1K153_SOYBN; MADS transcription factor | ||||
STRING | GLYMA05G07380.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60910.1 | 8e-96 | AGAMOUS-like 8 |