PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14683.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 344aa    MW: 39178.1 Da    PI: 4.4158
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14683.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS113.82.3e-3515234443238
        GRAS  43 ayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLas 134
                 ++f +AL+ r+ r + +    +++++ ++  s + l a k+       f+e  P+ ++s +t  q I e v++++++H+iD++i++G+QW  L+qaL s
  KHN14683.1 152 QHFEQALRLRMDRATGR----VSCKDLQKGPSFDPLEAAKVlnptvvaFYEELPFCQISVFTEVQDIIEDVAEAKKIHVIDLEIKKGGQWTILMQALES 246
                 5899********93333....334444433344444444444444568*************************************************** PP

        GRAS 135 Rpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk 232
                 R e p   l+iT+v+s +    +  e tg+rL+++A+ l++pf+fn+++++++  l  + ++++ +E +aV ++++l +   es +le     ++++++
  KHN14683.1 247 RHECPIeLLKITAVESGT--TGHIAEDTGKRLKDYAQGLNLPFSFNIVMVSDMLHL-GDVFEIDAEEIIAVYSHFALRTKILESDQLEI----MMRVIR 338
                 **7665499*******55..888999*********************999888777.778899***************99989999999....****** PP

        GRAS 233 slsPkv 238
                 +lsP v
  KHN14683.1 339 TLSPIV 344
                 ***965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.289344IPR005202Transcription factor GRAS
PfamPF035148.0E-33152344IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEDLYHVSFT TDANFSSSND ILWCTEELNE LRKVQFSRAE DHGDYGGIDP LYSNFGFFPD  60
DPSTNHQKYH QQLQPSYHDY GKFDDNLQFD MGFKRLRNDD VAMATTNEES ESLPFLETHP  120
FGIYFSGLSD EEKEDAKLAE FLLASAEKVG QQHFEQALRL RMDRATGRVS CKDLQKGPSF  180
DPLEAAKVLN PTVVAFYEEL PFCQISVFTE VQDIIEDVAE AKKIHVIDLE IKKGGQWTIL  240
MQALESRHEC PIELLKITAV ESGTTGHIAE DTGKRLKDYA QGLNLPFSFN IVMVSDMLHL  300
GDVFEIDAEE IIAVYSHFAL RTKILESDQL EIMMRVIRTL SPIV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14683.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180248.10.0DELLA protein RGL2-like
TrEMBLA0A0B2Q3X20.0A0A0B2Q3X2_GLYSO; Scarecrow-like protein 4
STRINGGLYMA09G04110.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-16GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]