PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14682.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 593aa    MW: 67365.8 Da    PI: 4.554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14682.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.44e-952205912374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk.al.ppsetsekn.sseelaalklfsevsPilkfshlt 97 
                  e Ll+cAe v ++++e+a++lL++ + l+s++g+p++R+++yf+eAL++r+  ++ ++++  l + ++ ++++  +e + a  +f+e  P+ k++++t
  KHN14682.1 220 AESLLACAEKVGNKQFERASKLLSHCESLSSKTGNPVKRIVHYFAEALRQRIDTETGRVSSkDLqKGQPFDPEEaAKELTPAILAFVEDLPFCKVAQFT 318
                 578**************************************************96666654145455555555546666667777************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 a qaI e v++++r+HiiD++i +G+QW   +qaL  R e p   l+iT+v+s +   ++  e tg+rL+++A+ l++pf+fn+++++ +  l+ + ++
  KHN14682.1 319 AAQAIIEDVAEAKRIHIIDLEIRKGGQWTIVMQALQLRHECPIeLLKITAVESGT--TRHIAEDTGQRLKDYAQGLNIPFSFNIVMVSGMLHLREDLFE 415
                 ***************************************7665499*******44..89999************************************* PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 ++p+E++aV + + l + l++s +le     ++++++++sP+v+vv+e ea+hns+sF++rf+eal  +sa+fd++ea +  ++++r+ +E +++++ i
  KHN14682.1 416 IDPEETIAVYSPYCLRTKLQQSDQLET----IMRVIRTISPDVMVVAEIEANHNSKSFVNRFVEALFSFSAFFDCFEACMKGDEKNRMIIESMYFSPGI 510
                 *****************9988888888....******************************************************************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +n+va+egaerr r  +   Wr+ ++++G+++ +ls+    qa+l+ ++++ ++  + e + ++l++gWk+ p+ svS+W+
  KHN14682.1 511 RNIVAAEGAERRSRSVKIDVWRAFFSRFGMEEKELSTLSLYQAELVAKRFPcGNFCTFERNGHCLLIGWKGTPINSVSVWK 591
                 ***************************************************888788899999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.492193570IPR005202Transcription factor GRAS
PfamPF035141.4E-92220591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDDLYYAGFS TDDNSSSSND FFWDNEGLND VRKFQFSGVE DHEEYGGIDS FYSNFGFFPD  60
DPSEEGYLLS TNHQKYHQIF DDYGLLDDNL QFDMVSPPLQ FDEQYRTMVP LCNSTKDMPH  120
STTPLASLEI LKSYGKGFKR FWNEGNNTMQ PIDDETLATD EVIAGRNLST EDLMRIAGTR  180
FIQSSSSSSD SESLPFLENH PFGFSFSGFS DEEKEDLELA ESLLACAEKV GNKQFERASK  240
LLSHCESLSS KTGNPVKRIV HYFAEALRQR IDTETGRVSS KDLQKGQPFD PEEAAKELTP  300
AILAFVEDLP FCKVAQFTAA QAIIEDVAEA KRIHIIDLEI RKGGQWTIVM QALQLRHECP  360
IELLKITAVE SGTTRHIAED TGQRLKDYAQ GLNIPFSFNI VMVSGMLHLR EDLFEIDPEE  420
TIAVYSPYCL RTKLQQSDQL ETIMRVIRTI SPDVMVVAEI EANHNSKSFV NRFVEALFSF  480
SAFFDCFEAC MKGDEKNRMI IESMYFSPGI RNIVAAEGAE RRSRSVKIDV WRAFFSRFGM  540
EEKELSTLSL YQAELVAKRF PCGNFCTFER NGHCLLIGWK GTPINSVSVW KFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-412215916375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14682.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546321.10.0DELLA protein RGL1
RefseqXP_028202900.10.0DELLA protein RGL1-like
TrEMBLA0A0B2Q4E00.0A0A0B2Q4E0_GLYSO; DELLA protein RGL2
TrEMBLI1MGF60.0I1MGF6_SOYBN; Uncharacterized protein
STRINGGLYMA15G15110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-51RGA-like 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]