PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN13763.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 262aa MW: 28466.4 Da PI: 10.5429

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN13763.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.4e-31	191	248	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ KHN13763.1 191 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHT 248 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.3E-17	141	187	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.7E-33	177	248	IPR003657	WRKY domain
PROSITE profile	PS50811	30.859	184	250	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-27	186	249	IPR003657	WRKY domain
SMART	SM00774	4.2E-38	189	249	IPR003657	WRKY domain
Pfam	PF03106	4.0E-27	191	247	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDCKVVADVA VSKFKKVISL LGRTRTGHAR FRRAPLPNQN QHTQPPSEPP VFHATPLHQI 60 PPPSLHQIPK TERNLNDSSS SKTIHFSYPS AATSFISSLT GDGAADNKHP AAGAPTPPFQ 120 ITSLSHVSSA GKPPLSTSSF KRKCSSENLG SGKCGSSSSR CHCSKKSRKM RLKRVVRVPA 180 ISLKMADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERA LDDPAMLVVT 240 YEGEHNHTLS AADATNLILE SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-21	186	251	14	78	Probable WRKY transcription factor 4
2lex_A	1e-21	186	251	14	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN13763.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU375356	0.0	EU375356.1 Glycine max transcription factor (WRKY11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237671.1	1e-175	WRKY transcription factor 11
Refseq	XP_028232119.1	1e-175	probable WRKY transcription factor 15
Swissprot	O22176	2e-82	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A0B2Q1E4	0.0	A0A0B2Q1E4_GLYSO; Putative WRKY transcription factor 15
STRING	GLYMA05G20710.1	1e-175	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2177	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	2e-71	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]