PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13600.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 364aa    MW: 41234.3 Da    PI: 5.6671
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13600.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-53191451129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lp+GfrFhP+deel+++yL+kkv ++ + +  +i+evd++k+ePwdLp  +k +e+ewyfF+ rd+k +tg r+nrat+ gyWkatgkdke++  +++l
  KHN13600.1  19 LPAGFRFHPRDEELINHYLTKKVVDNCFCA-VAIAEVDLNKCEPWDLPGLAKMGETEWYFFCVRDRKFPTGIRTNRATDIGYWKATGKDKEIIM-ENAL 115
                 799***********************9877.67***************8888899***************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 +g+kktLvfykgrapkgekt+Wvmheyrle
  KHN13600.1 116 IGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 145
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6116166IPR003441NAC domain
PROSITE profilePS5100557.67619166IPR003441NAC domain
PfamPF023654.0E-2820144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGSIENASKP RKENPKFELP AGFRFHPRDE ELINHYLTKK VVDNCFCAVA IAEVDLNKCE  60
PWDLPGLAKM GETEWYFFCV RDRKFPTGIR TNRATDIGYW KATGKDKEII MENALIGMKK  120
TLVFYKGRAP KGEKTNWVMH EYRLEGKHNQ PKPGKSEWVI CRVFEKSRCG KKMHVPKCGR  180
FNNPFGEEPS SGASLLPPLM DSSPYNSETR TTTAGELSQL TCFSDPNQTE DQNNTHDDIV  240
DSMETPILNF SPFSRPDDAS TLAKATLSSA SNQSAQIAHQ IGESQFPDYC YAPQEPSMLR  300
MLMENHEPCA KQTQKEEFPE GRDFDGDISS MIYSSDMINR MFGNQEHSSS ASAGPVDTDF  360
LWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-511617214171NO APICAL MERISTEM PROTEIN
1ut4_B5e-511617214171NO APICAL MERISTEM PROTEIN
1ut7_A5e-511617214171NO APICAL MERISTEM PROTEIN
1ut7_B5e-511617214171NO APICAL MERISTEM PROTEIN
3swm_A6e-511617217174NAC domain-containing protein 19
3swm_B6e-511617217174NAC domain-containing protein 19
3swm_C6e-511617217174NAC domain-containing protein 19
3swm_D6e-511617217174NAC domain-containing protein 19
3swp_A6e-511617217174NAC domain-containing protein 19
3swp_B6e-511617217174NAC domain-containing protein 19
3swp_C6e-511617217174NAC domain-containing protein 19
3swp_D6e-511617217174NAC domain-containing protein 19
4dul_A5e-511617214171NAC domain-containing protein 19
4dul_B5e-511617214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3923980.0JX392398.1 Glycine max NAC domain protein (NLP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551739.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_006602918.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_006602923.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_025982386.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_025982387.10.0NAC domain-containing protein 100-like isoform X1
SwissprotQ9FLJ21e-102NC100_ARATH; NAC domain-containing protein 100
TrEMBLK7MUU00.0K7MUU0_SOYBN; Uncharacterized protein
STRINGGLYMA18G49620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-101NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]