PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12931.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 321aa    MW: 35837.2 Da    PI: 6.3693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12931.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30184242259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p+++++tY+g+H h+
  KHN12931.1 184 ADLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCMARKQVERSNTEPDMFIVTYSGDHSHP 242
                 699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30169244IPR003657WRKY domain
SuperFamilySSF1182903.79E-26178244IPR003657WRKY domain
PROSITE profilePS5081132.546178244IPR003657WRKY domain
SMARTSM007741.9E-36183243IPR003657WRKY domain
PfamPF031066.6E-26185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAEDWDLFAI VRSCQSATTT IPQTTTNNTS SPLITSTVKE ENYDGFSFPN IVQPITNEFQ  60
ALHQLFTPFN PTTNTTNTSA SGINPNSPYF AEQESQQISE HLPIWPHFVP EHSSTPSFSR  120
FHDHQQQQQQ INQLQALQKH EFQLPQNNSP TVSPNAQPQT PKSRKRKSQQ KKMVCHVTAD  180
NLSADLWAWR KYGQKPIKGS PYPRNYYRCS SSKGCMARKQ VERSNTEPDM FIVTYSGDHS  240
HPRPTHRNSL AGSTRNKIPA TNPLPSPGSL SSFQATPFSS SSSSPPHSPT SPSEEPPETG  300
DLEPDPDMET DGDDDGDIQI Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20167245280Disease resistance protein RRS1
5w3x_D2e-20167245280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195531e-153EU019553.1 Glycine max WRKY2 (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555395.10.0probable WRKY transcription factor 27
RefseqXP_028220877.10.0probable WRKY transcription factor 27
TrEMBLA0A0B2PUC10.0A0A0B2PUC1_GLYSO; Putative WRKY transcription factor 27
TrEMBLI1NGY60.0I1NGY6_SOYBN; Uncharacterized protein
STRINGGLYMA20G30290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-53WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]