PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN12878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 595aa MW: 67676.5 Da PI: 4.7455 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 295.7 | 1.2e-90 | 224 | 593 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl..fsevsPilkfshl 96 e Ll+cAe v ++++e+a++lL+r + l+ ++g+p++R+++yf+eAL++r+ r ++ yk l+ ++ + +++l+ + + f+e P+ ++s + KHN12878.1 224 AESLLACAEKVGHQQFERASKLLSRCESLSCKTGSPVRRIVHYFAEALRQRIDRaTGRVSYKDLQKGPSFDPLeATKVLNPT-VvaFYEELPFCQISVF 321 578***************************************************5555566777555544333133333333.257************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 t q I e v++++++H+iD++i +G+QW L+qaL sR e p l+iT+v+s + ++ e tgerL+++A+ l++pf++n+++++++ l + + KHN12878.1 322 TEVQVIIEDVAEAKKIHVIDLEIRKGVQWTILMQALESRHECPIeLLKITAVESGT--TRHIAEDTGERLKDYAQGLNIPFSYNIVMVSDMLHLGEDVF 418 ****************************************7665499*******44..89999************************************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +++p+E+++V ++++l + +es++le ++++++ l+P v+vv+e ea+hns+sF++rf+eal ++s++fd+le+ + ++ +r+ vE +++ KHN12878.1 419 EIDPEETIVVYSHFALRTKIQESGQLEI----MMRVIRILNPSVMVVAEIEANHNSTSFVNRFIEALFFFSTFFDCLETCMKGDEGNRMIVESLYFSHG 513 ****************************....******************************************************************* PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+n+va+egaer r + Wr+ ++++G+ + +ls+ qa+l+ ++++s + +++ ++l++gWk+ p+ svS+W+ KHN12878.1 514 IRNIVAAEGAERDSRSVKIDVWRAFFSRFGMVEKELSKLCLFQADLVAKRFPSY-STFDKNGHCLLIGWKGTPINSVSVWK 593 ****************************************************55.8999999******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.046 | 197 | 574 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-88 | 224 | 593 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MEDLYHVSFT TDDNSSSSND ILWCTEELNE LRKVQFSGAE DHGEYGGIDP LYSNFGFFPD 60 DPSEQEGYLL STDQQKYHQQ VQPSYHDYGQ LDDNLQFDMV SLPLQFDAQY PTMVPLCHTT 120 KDKPNSNSNT PLASLDILNN YGKGFKRLRN EDKTLKQVDD VAMATTNEGI MRKLSTEDVM 180 RIAGTRFIQS SSSESESLPF LETHPFGIYF SGLSNEEKED VELAESLLAC AEKVGHQQFE 240 RASKLLSRCE SLSCKTGSPV RRIVHYFAEA LRQRIDRATG RVSYKDLQKG PSFDPLEATK 300 VLNPTVVAFY EELPFCQISV FTEVQVIIED VAEAKKIHVI DLEIRKGVQW TILMQALESR 360 HECPIELLKI TAVESGTTRH IAEDTGERLK DYAQGLNIPF SYNIVMVSDM LHLGEDVFEI 420 DPEETIVVYS HFALRTKIQE SGQLEIMMRV IRILNPSVMV VAEIEANHNS TSFVNRFIEA 480 LFFFSTFFDC LETCMKGDEG NRMIVESLYF SHGIRNIVAA EGAERDSRSV KIDVWRAFFS 540 RFGMVEKELS KLCLFQADLV AKRFPSYSTF DKNGHCLLIG WKGTPINSVS VWKFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-38 | 225 | 593 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN12878.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028180248.1 | 0.0 | DELLA protein RGL2-like | ||||
TrEMBL | A0A0B2PYP4 | 0.0 | A0A0B2PYP4_GLYSO; DELLA protein RGL2 | ||||
STRING | GLYMA09G04110.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-56 | RGA-like 2 |
Publications ? help Back to Top | |||
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