PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12801.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 132aa    MW: 14898.8 Da    PI: 10.0612
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12801.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17352255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  KHN12801.1  3 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPMAAARAYDTAVFYLRG 52
                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-36366IPR001471AP2/ERF domain
PROSITE profilePS5103222.142360IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21361IPR016177DNA-binding domain
CDDcd000181.72E-26462No hitNo description
PRINTSPR003679.4E-12415IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-30461IPR001471AP2/ERF domain
PfamPF008479.3E-11452IPR001471AP2/ERF domain
PRINTSPR003679.4E-124262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MKPYRGIRMR KWGKWVAEIR EPNKRSRIWL GSYTTPMAAA RAYDTAVFYL RGPTARLNFP  60
ELLFQDDQEE GNDSVQHGAA AGNMSADSIR RKATQVGARV DALQTALHHH ASSTNSLKPD  120
LNEFPKLESL QD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15260463ATERF1
3gcc_A2e-15260463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5149081e-150AF514908.1 Glycine max dehydration responsive element binding protein (DREB1) mRNA, complete cds.
GenBankKT0310881e-150KT031088.1 Glycine max clone HN_CCL_2 AP2-EREBP transcription factor (Glyma14g09320.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550331.12e-96ethylene-responsive transcription factor RAP2-1
RefseqXP_028209656.12e-96ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC305e-48RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A445GB234e-95A0A445GB23_GLYSO; Ethylene-responsive transcription factor RAP2-1
TrEMBLI1MXM44e-95I1MXM4_SOYBN; Uncharacterized protein
STRINGGLYMA17G35860.17e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-50related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]