PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN12796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31299.3 Da PI: 5.2571 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.5 | 6.1e-28 | 9 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppG+rF P++e lv +yL+kk e+++ + ++ ike+d+y+++P +Lp + + + ++ ++F+ +++ t++r++r++ksg+W +gk + KHN12796.1 9 LPPGYRFYPSEEVLVGYYLTKKNENREegFYGSDLIKELDLYDHDPFELPdAaacfsyGY--KGRKKHWFCYAKE---TKRRNRRKVKSGFWLRKGKVR 102 79*********************999966566688**************95367764433..4445555555544...34588999************* PP NAM 91 evlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++ ++ ++ + g+++ +vfy g + +++ +tdW++ ey+l KHN12796.1 103 DISDHngDDVVLGTRTRFVFYVGnSLKNAARTDWILYEYAL 143 ***995555669*********874668889*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-32 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.657 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-16 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEDHAHAALP PGYRFYPSEE VLVGYYLTKK NENREEGFYG SDLIKELDLY DHDPFELPDA 60 AACFSYGYKG RKKHWFCYAK ETKRRNRRKV KSGFWLRKGK VRDISDHNGD DVVLGTRTRF 120 VFYVGNSLKN AARTDWILYE YALVDRFLAS FVLCRVVNKP PHKNSPSEIG LSCCAEESVV 180 AVVRQVGVQC DGCAESDVVE AKVCDEGFVN RENEIAENPI SGEHGDPAAP VSVAQGSQPV 240 QERLSKLPSG SALFVGAMTS QQLMLSILEE DFIELDDIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-17 | 5 | 159 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-17 | 5 | 159 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-17 | 5 | 159 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-17 | 5 | 159 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-17 | 5 | 159 | 16 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-17 | 5 | 159 | 13 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-17 | 5 | 159 | 13 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN12796.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028208770.1 | 0.0 | NAC domain-containing protein 104-like isoform X2 | ||||
Refseq | XP_028208771.1 | 0.0 | NAC domain-containing protein 104-like isoform X2 | ||||
TrEMBL | A0A445GB50 | 0.0 | A0A445GB50_GLYSO; NAC domain-containing protein 71 isoform C | ||||
STRING | GLYMA17G35930.2 | 1e-177 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32510.1 | 2e-26 | NAC domain containing protein 11 |
Publications ? help Back to Top | |||
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