PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN12667.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 327aa MW: 35695.2 Da PI: 7.2575

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN12667.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223	5.8e-69	111	262	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrel.kskkqsalsstklssaeskk 98 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ + ++skr+re+ + +++ +l++ ++ + ++ KHN12667.1 111 GGMNCQDCGNQAKKDCQHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQHQQQNQQpqfRGDHSKRHRENiEGAAAGSLACVPVPIT--TT 207 789**************************************************9999988888888899999999823344455555555555..56 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le ++P+e++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++ KHN12667.1 208 GLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTD 262 79999**********************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-66	112	262	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.6E-27	114	156	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-24	213	260	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAGFFSLGRQ NKAEEQEEDQ REDNCQFLFR NNVNEEIYNK GFEIWPQSSY HHHHQNLTNF 60 YSFGVGPSRR NNNNSSSNNN VNDEVSVSFS DESNRFGFTV MRSGGGGVGG GGMNCQDCGN 120 QAKKDCQHLR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ QQLSALQHQQ QNQQPQFRGD 180 HSKRHRENIE GAAAGSLACV PVPITTTGLE LGQFPPELNS PAVFRCVKVS AMDAPDERYA 240 YQTAVNIGGH VFKGILYDQG TDGPYAGAGC EGSSGGGGEA QPLSLMAAAT TTTAATTTSG 300 NPFEASLYTA PMNAYMAGTH FFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN12667.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003550407.1	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	Q9FXH7	2e-78	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	I1MY05	0.0	I1MY05_SOYBN; Uncharacterized protein
STRING	GLYMA17G37410.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-65	SHI-related sequence 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]