PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN11419.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 224aa MW: 24738.5 Da PI: 9.0322

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN11419.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.4	2e-27	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C+++C+++p++ p++q++++ +++k++G++ +l+l++a+p++ + +++sl+yeA+ r+ +P yG++g+++++++ +++++++ KHN11419.1 4 SCNGCRILRKGCNANCIIRPCLewmnsPESQANATLFLAKFYGRTGLLNLITAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFWTGEWAQCEAAVDA 102 6************************************************************************************************99 PP DUF260 95 allkee 100 +l++++ KHN11419.1 103 VLTGSK 108 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.529	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-22	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MKSSCNGCRI LRKGCNANCI IRPCLEWMNS PESQANATLF LAKFYGRTGL LNLITAAPQH 60 LGPVVFRSLL YEACGRLVNP TYGSLGLFWT GEWAQCEAAV DAVLTGSKIN GVAPSDGHTS 120 GTLASDHILS TCDIRHMKNG TNVDDMRGRI QFKNVKQVIK PKPRMGSIDS TMLWKPNCQS 180 QSMETIEASL VSQDELNRVR KIKLDLELTL GFRCQSTNGK KTHY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN11419.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028219642.1	1e-169	LOB domain-containing protein 40-like
Swissprot	Q9CA30	3e-57	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A445F3W2	1e-168	A0A445F3W2_GLYSO; LOB domain-containing protein 42
STRING	GLYMA20G24950.1	1e-167	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14785	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	1e-59	LOB domain-containing protein 42

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]