PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN09281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 408aa MW: 44525.1 Da PI: 6.2281 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.5 | 6.6e-29 | 198 | 256 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s gC ++k+vers+++p+++++tY+g+H+h KHN09281.1 198 SDLWAWRKYGQKPIKGSPYPRNYYRCSSCkGCVARKQVERSTTEPNTFIVTYTGDHKHA 256 799***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-29 | 184 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-25 | 192 | 258 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.514 | 192 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-32 | 197 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-23 | 199 | 255 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MTHEDWDLFA IVRSCKAATF TATTNTETPP TPTPNTTSCL DLSQENGSFS FPNLVQPTTN 60 GFQELQHQQL VINFNPTNTT STTSSTSTIT SGLGINPNST FSEVAGFIGQ QQGYHHHLLP 120 APTNHTSIGT PTTTGFDRFQ HHQQQQLQSP EQNQPPLQAP QTSPILSPTT QPQTPRSRKR 180 KSHQKKMVCH VTADNLSSDL WAWRKYGQKP IKGSPYPRNY YRCSSCKGCV ARKQVERSTT 240 EPNTFIVTYT GDHKHAKPVQ RNSLAGSTRT KPSTTRLSEP NESVTCPKRE NACSSNSELS 300 PMLSVSDTPK NEETVSAGEP DCPDMEIEPS ENDDDDVLIP NTGAMSDAVL LGLTNVDRDG 360 VSTLGIDQKN TSGSCQSYPE PDPFSKPGLY SSALGPAKLA DLLDDCNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-17 | 186 | 258 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | SRKRKS |
2 | 178 | 182 | KRKSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN09281.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 4e-43 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549016.1 | 0.0 | probable WRKY transcription factor 27 | ||||
Refseq | XP_028206725.1 | 0.0 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A0B2PIV0 | 0.0 | A0A0B2PIV0_GLYSO; Putative WRKY transcription factor 27 | ||||
STRING | GLYMA16G29561.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6794 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 4e-51 | WRKY DNA-binding protein 27 |
Publications ? help Back to Top | |||
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