PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09277.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 403aa    MW: 44339 Da    PI: 6.5032
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09277.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.5e-29199257259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s  gC ++k+vers+++p+++++tY+g+H+h 
  KHN09277.1 199 SDLWAWRKYGQKPIKGSPYPRNYYRCSSCkGCVARKQVERSTTEPNTFIVTYTGDHKHA 257
                 799***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-29184259IPR003657WRKY domain
PROSITE profilePS5081131.514193259IPR003657WRKY domain
SuperFamilySSF1182907.98E-25193259IPR003657WRKY domain
SMARTSM007741.2E-32198258IPR003657WRKY domain
PfamPF031061.8E-23200256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MTHEDWDLFA LVRSCKAATF TATTNTETPP TTTPNTTSCL DLSQENGSLF SFPSLVQPTT  60
NGFQELQHQQ LVINFNPTNT TSTTTSTSTI TSDLGINPNS TLSEVVGFIG QQQGYHHHLL  120
PAPTNHTSIG TPTTTGFDRF QHHQQQQLQS PEQNQPPPQA PQTSPILSPT TQPQTPRSRK  180
RKSQQKKMVC HVTADNLSSD LWAWRKYGQK PIKGSPYPRN YYRCSSCKGC VARKQVERST  240
TEPNTFIVTY TGDHKHAKPV HRNSLAGSTR TKPSTTRLSE PNESVSCPKK ENACSSNSEL  300
SPMLSVSDTL ENEETVSASE PDCPDMEIEP SDNDDVLIPN TGAMSDAVLL GLTNVERDGV  360
STSEKHFRVE TVLSGTRPDF QPGLDSSALR RTKLADLHDD CNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-17187259274WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-49AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028208037.10.0probable WRKY transcription factor 27
TrEMBLA0A0B2PP070.0A0A0B2PP07_GLYSO; WRKY transcription factor 22
STRINGGLYMA16G29561.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-46WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]