PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 46712.8 Da PI: 6.2348 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 175 | 229 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQkYR++ KHN08803.1 175 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 229 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.042 | 172 | 231 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 173 | 232 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-18 | 173 | 232 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-26 | 175 | 229 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 178 | 227 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MLAVSPLRSI KDEKNQGEME GNFSMATTTT TGDVDFGDLS EGNLLESINF DDLFVGIDIN 60 GDVLPDLEMF HEFSVDVNTG EESSEMNSSA DNSKVENDQN VMINTGPKKE EEEDKASCNS 120 SGQDLGSIRG EEIVSKRDES VVVNPAPKDG GKGRKSSSAQ SKNNNSSNNA QGKRKVKVDW 180 TPELHRRFVQ AVEQLGVDKA VPSRILEIMG IDCLTRHNIA SHLQKYRSHR KHLLAREAEA 240 ASWSQRRQLY AGGGKREGNP WLAPIMGFPP MTTPMHHFRP LHVWGHPSMS LVHMWPKHLS 300 NSPPLLWPLS PPAVPPQDPS FWQQLAPNAL IPGTACFPQP LTPTRFGSPP VPGIPPHAMY 360 KADHGIGVLG PSSLLDFHPS KECIDAAIGD VLSKPWLPLP IGLKAPALDS VMSELQKQGI 420 PNIPPSSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-16 | 172 | 227 | 2 | 57 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08803.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095503 | 0.0 | BT095503.1 Soybean clone JCVI-FLGm-19O16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028192207.1 | 0.0 | transcription activator GLK1-like | ||||
Swissprot | Q9SIV3 | 3e-94 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A0B2PMF1 | 0.0 | A0A0B2PMF1_GLYSO; Transcription activator GLK1 | ||||
STRING | GLYMA12G13430.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 1e-85 | GBF's pro-rich region-interacting factor 1 |