PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN08771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 361aa MW: 39707.9 Da PI: 8.3938 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ KHN08771.1 60 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.73E-17 | 54 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.341 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.1E-17 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.7E-13 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-14 | 60 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-9 | 60 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.21E-10 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MAIQDQNGFN RSQGGPPIGG GVSLSSGVHS VTHIQLSDQF SCGNDYALKV RKPYTITKQR 60 ERWTDEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKLLR DPTGNNTNTV 120 ESIEIPPPRP KRKPVHPYPR KLVETPNKEI LIPEQLMKSN SLKSSDFDQE NQSPKSVLSG 180 VGSDSLGSSD SDTPYGSLSP MSSISGIHTS SFTRAEPKTT SEEAGMDTDS AHDEKPLMKF 240 KLPPNECVSI KDDTAEESSG RTFKLFGMTL FVTDTCKPSP TIEACKPIPL NIRVRCLSSS 300 MGDDGKLELL GHSTASETSA VSKLKVRVGP EACGKGFVPY KRCISVVTAD NREEQCIHLS 360 L |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN08771.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031199 | 0.0 | KT031199.1 Glycine max clone HN_CCL_153 MYB/HD-like transcription factor (Glyma11g33180.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028215515.1 | 0.0 | protein REVEILLE 1-like | ||||
TrEMBL | A0A0B2PHH5 | 0.0 | A0A0B2PHH5_GLYSO; Myb-like protein G | ||||
STRING | GLYMA18G05050.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17300.1 | 3e-48 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|