PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 102aa MW: 11899.9 Da PI: 10.0394 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 51.1 | 2.6e-16 | 3 | 100 | 277 | 374 |
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++e ri +E l++ i+n+va+e er+ r+ + Wr+ + + + + ++se+ qa+l+ +k++ ++ +v+ + ++l+ gWk+ p+ s+S+W+ KHN08632.1 3 QDHECRIRIEGI-LSEGIRNIVAMEDGERKVRNVKIDVWRRFFARYRMVETTFSESSLYQANLVAKKFAcGNFCTVDRNGKCLIVGWKGTPIHSISVWK 100 577899999998.9*******************************************************888889999999*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.9E-14 | 3 | 100 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MKQDHECRIR IEGILSEGIR NIVAMEDGER KVRNVKIDVW RRFFARYRMV ETTFSESSLY 60 QANLVAKKFA CGNFCTVDRN GKCLIVGWKG TPIHSISVWK FL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08632.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-104 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413104.1 | 3e-61 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_020225103.1 | 2e-61 | scarecrow-like protein 18 | ||||
TrEMBL | A0A0B2PM29 | 7e-70 | A0A0B2PM29_GLYSO; DELLA protein RGL2 | ||||
TrEMBL | A0A0R0KPV6 | 1e-67 | A0A0R0KPV6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445LI55 | 4e-67 | A0A445LI55_GLYSO; DELLA protein RGL2 | ||||
STRING | GLYMA02G01530.2 | 3e-68 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-09 | RGA-like 2 |
Publications ? help Back to Top | |||
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