PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08355.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22380.9 Da    PI: 10.3997
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08355.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.42.8e-26959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ienk+ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f  +gkl+eyss
  KHN08355.1  9 KQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSS 59
                78***********************************************96 PP
2K-box76.85.5e-265912633100
       K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +e R+++G+dL++L+l+eLq+Le+qL++++k+iR+++n+++ e+i++lqkk ++lqe+n +L+kk++e
  KHN08355.1  59 SESRNFVGQDLDPLNLRELQSLEHQLDTAIKRIRTRQNQVMNESISDLQKKARQLQEQNGTLTKKIKE 126
                 678**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
CDDcd002658.26E-34261No hitNo description
SuperFamilySSF554554.71E-27265IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.74440130IPR002487Transcription factor, K-box
PfamPF014867.3E-2158124IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGRVQLKQ IENKISRQVT FSKRRTGLRK KANEISVLCD AQVALIVFNA KGKLFEYSSE  60
SRNFVGQDLD PLNLRELQSL EHQLDTAIKR IRTRQNQVMN ESISDLQKKA RQLQEQNGTL  120
TKKIKEKGKP VVEPPHCGPE TLGLTFPPEL QPQQRLVPSL TLCETLQAAP LEEVVEARTV  180
PTATTHIPPW MLHPFTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18159159MEF2 CHIMERA
6byy_B4e-18159159MEF2 CHIMERA
6byy_C4e-18159159MEF2 CHIMERA
6byy_D4e-18159159MEF2 CHIMERA
6bz1_A4e-18159159MEF2 CHIMERA
6bz1_B4e-18159159MEF2 CHIMERA
6bz1_C4e-18159159MEF2 CHIMERA
6bz1_D4e-18159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150445e-56AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593704.11e-134truncated transcription factor CAULIFLOWER A
RefseqXP_028196815.11e-134truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S75e-59AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0B2PGI71e-142A0A0B2PGI7_GLYSO; Agamous-like MADS-box protein AGL8
STRINGGLYMA13G06811.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-57AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]