PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08262.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25751.5 Da    PI: 4.9587
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08262.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.6e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g++KKAeELSvLCdaev +i+fsstgkl++ys+
  KHN08262.1  9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSN 59
                68***********************************************95 PP
2K-box41.65.1e-151031713199
       K-box  31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   +e+  l+ +dL+ L l+eLqqLe+ +e +l ++ + K++ +++qi+elqkk + l+eenk L+kkl 
  KHN08262.1 103 RTQELSWLKDNDLQGLGLNELQQLEKTIEIGLDRVTEIKEKQIMSQISELQKKGNLLEEENKHLKKKLV 171
                 45556667778*******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.38161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-29274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-251057IPR002100Transcription factor, MADS-box
CDDcd002652.75E-311275No hitNo description
PRINTSPR004041.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.54386176IPR002487Transcription factor, K-box
PfamPF014861.0E-1194170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTRAKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVGLIVFSS TGKLFDYSNA  60
SINDIITIYN THSHGVNKLG KPSLELQLEA GNSAKFSKEI VDRTQELSWL KDNDLQGLGL  120
NELQQLEKTI EIGLDRVTEI KEKQIMSQIS ELQKKGNLLE EENKHLKKKL VETEMEAMLC  180
EPEIPFMVDL DKRIMQEEGV SLDSTNNISS CINDPPPEDG SSDISLTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17173173MEF2C
5f28_B3e-17173173MEF2C
5f28_C3e-17173173MEF2C
5f28_D3e-17173173MEF2C
6byy_A3e-17173173MEF2 CHIMERA
6byy_B3e-17173173MEF2 CHIMERA
6byy_C3e-17173173MEF2 CHIMERA
6byy_D3e-17173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938240.0BT093824.1 Soybean clone JCVI-FLGm-17H2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227014.11e-166MADS-box protein AGL24-like
SwissprotQ9FUY64e-69JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A445K7751e-140A0A445K775_GLYSO; MADS-box protein SVP isoform A
TrEMBLC6T8M21e-140C6T8M2_SOYBN; Uncharacterized protein
STRINGGLYMA06G10020.31e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]