PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08169.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 351aa    MW: 39601.9 Da    PI: 9.2531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08169.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.28e-5481381128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                 lppGfrFhPtdeel+ +yL kkv++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++    
  KHN08169.1   8 LPPGFRFHPTDEELILHYLSKKVASIPLPV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSlqgg 105
                 79****************************.89***************988899****************************************99987 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +e vg+kk Lvfykgr pkg+kt+W+mheyrl
  KHN08169.1 106 AQESVGVKKALVFYKGRPPKGVKTNWIMHEYRL 138
                 7788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-645165IPR003441NAC domain
PROSITE profilePS5100562.3758165IPR003441NAC domain
PfamPF023651.1E-279138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGNPESNLPP GFRFHPTDEE LILHYLSKKV ASIPLPVSII AEVDIYKLDP WDLPAKATFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVT SLQGGAQESV GVKKALVFYK  120
GRPPKGVKTN WIMHEYRLVD NNKPIKLKDS SMRLDDWVLC RIYKKSKHPL TSTEASIGVG  180
DVDQAEEHVF KETLLPISKS PTPPPQNTLI SQKSVSFSNL LDAMDYSILS SFLSENHTTH  240
PPGVGSSTGF NTGNLDQQPS PIDNSNGYMF QKNNPQLNPS VSNMENMMRP KRQVSNMDEE  300
TLYPSKKYLS SSCNFPTNIN NQYENPQWNY LMKQSLLNQR LMLGPHLQFQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-73716516165NO APICAL MERISTEM PROTEIN
1ut4_B1e-73716516165NO APICAL MERISTEM PROTEIN
1ut7_A1e-73716516165NO APICAL MERISTEM PROTEIN
1ut7_B1e-73716516165NO APICAL MERISTEM PROTEIN
3swm_A1e-73716519168NAC domain-containing protein 19
3swm_B1e-73716519168NAC domain-containing protein 19
3swm_C1e-73716519168NAC domain-containing protein 19
3swm_D1e-73716519168NAC domain-containing protein 19
3swp_A1e-73716519168NAC domain-containing protein 19
3swp_B1e-73716519168NAC domain-containing protein 19
3swp_C1e-73716519168NAC domain-containing protein 19
3swp_D1e-73716519168NAC domain-containing protein 19
4dul_A1e-73716516165NAC domain-containing protein 19
4dul_B1e-73716516165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08169.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4403540.0EU440354.1 Glycine max transcriptional factor NAC11 (NAC11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236142.10.0transcriptional factor NAC11
RefseqXP_028219191.10.0NAC transcription factor 47-like
SwissprotQ84TD61e-109NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0B2PKC60.0A0A0B2PKC6_GLYSO; NAC domain-containing protein 29
TrEMBLB9U5I10.0B9U5I1_SOYBN; Transcriptional factor NAC11
STRINGGLYMA19G28476.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-112NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]