PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07880.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1130aa    MW: 126473 Da    PI: 6.5114
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07880.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22126227199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  KHN07880.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKQHLL 221
                 99*****************************9545444.38************************************************..5689999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  KHN07880.1 222 LGIRRA 227
                 ***997 PP
2Auxin_resp117.98.2e-39252334183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras+seFvv+++k++k ++++vs+GmRf+m+fete+s  rr++Gt++g++dldpvrW+ S+Wr+++
  KHN07880.1 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKVTYTQVSLGMRFRMMFETEESGVRRYMGTITGINDLDPVRWKSSQWRNIQ 334
                 79******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-18125226No hitNo description
PfamPF023621.2E-20126227IPR003340B3 DNA binding domain
SMARTSM010192.2E-22126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012126228IPR003340B3 DNA binding domain
PfamPF065071.3E-33252334IPR010525Auxin response factor
PfamPF023099.9E-99991088IPR033389AUX/IAA domain
PROSITE profilePS5174524.69210021095IPR000270PB1 domain
SuperFamilySSF542772.06E-810151080No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1130 aa     Download sequence    Send to blast
MKAPSNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVAKD LHDNTWAFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKVTYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGINDL DPVRWKSSQW RNIQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPRQPGMP DDESDMENAF KRAVPWLGDD FGMKDASSSI FPGFSLVQWM  420
SMQQNNQLTA AQSGCFPSML PFNTLQGNLS TDDPSKLLSF QAPVLSTPSL QLNKPNLPNQ  480
INQLQQSPVS WPQQQQLQQQ QQLQQQQQQQ QQQQQQLQQQ QQQQLQSLLQ VPMNHLQQQR  540
EQQLPEPQNL PLWQQLPQQL GQQPQKQQSS QHATIMNNGV VASNQITNQF SQQPMAYGQL  600
QQQQLLSGGI QSATKNTLPL TSLPQDSQFQ QQIDQQASLL QRQQQQQQTQ LQQSPLQLLQ  660
QNLPQRAPQQ PPATQMLQQN PSEQQLHLQL LQKLQQQQQH QQLLSTSTPL LLSQLLQQQN  720
THQQNQQLPQ PLPPISQHQP QQLGNNAFST EKLLNSNNLS SSLMQSQKLS MNHPQNTQKS  780
LTITRAPSTL TEGDAPSCST SPSTNNCQVT PPNLLKRNQQ LPATLRGSLI VEPTSNLIQE  840
LHSKPGTQIK QEFLNVKGPD QLKYKGTITD QLEASSGTSY CLDPPGNVQQ NLPLSNFCME  900
GDVQSHPRNS LPFDSNLDGL TPDTMLLTGY DSQKDLQNLL SNYGGAPREI ETELSTADIS  960
SQSFGVPNMP FKPGCSSDVG INDTGVLNNN NGLRANQTPR MRTYTKVQKR GSVGRCIDVT  1020
RYKGYDELRH DLARMFGIEG QLEDPLRTDW KLVYVDHEND ILLVGDDPWD EFVSCVQSIK  1080
ILSSAEVQQM SLDGDLGGNV PIPNQACSGT DSGNAWRGQY EDNSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1701535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197775.10.0auxin response factor 19-like
TrEMBLA0A0B2PF130.0A0A0B2PF13_GLYSO; Auxin response factor
STRINGGLYMA13G17270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]