PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN07584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 29073.7 Da PI: 8.4102 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H KHN07584.1 58 YSCNFCKREFRSAQALGGHMNVH 80 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-6 | 55 | 85 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.1E-6 | 58 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0072 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MEESQYLLWI KRKQILKSHI QQPFGTSNNN NSSSWEERAF AEDAARILGG CIWPPRSYSC 60 NFCKREFRSA QALGGHMNVH RRDRARLKQS LSHHNEALQH HQKNDCTVAT SKVSSSRAST 120 ISTQEICSHQ PTMSLYSSLI GWGHHHHMES PDSEPKGQVN AREEFLKGLG CNDYVETSLS 180 VGQSAVFGQK LPTTESCGDE SISYKRSKTS MPPLPGVFLK PCSNDRNLTF QSAEFVLGLK 240 PGMEDLDLEL RLGKPQKVI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 8e-13 | 53 | 80 | 2 | 29 | superman protein |
2l1o_A | 8e-13 | 53 | 80 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN07584.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-139 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601993.1 | 0.0 | zinc finger protein 10 | ||||
Refseq | XP_028213770.1 | 0.0 | zinc finger protein 10-like | ||||
TrEMBL | A0A445FNQ1 | 0.0 | A0A445FNQ1_GLYSO; Zinc finger protein 10 | ||||
TrEMBL | I1MZA5 | 0.0 | I1MZA5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G04030.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-25 | zinc-finger protein 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|