PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07386.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 683aa    MW: 75206.3 Da    PI: 5.8792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07386.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-08280300526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C++Gd C +aHg
  KHN07386.1 280 PCPEFRK-GSCRRGDLCEYAHG 300
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002047.71E-1410132No hitNo description
SMARTSM0024822001444IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.1E-1616164IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.58E-1617141IPR020683Ankyrin repeat-containing domain
PfamPF127963.2E-1123130IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00616191IPR002110Ankyrin repeat
PROSITE profilePS5029716.86561131IPR020683Ankyrin repeat-containing domain
PRINTSPR014151.8E-56277IPR002110Ankyrin repeat
SMARTSM002481.5E-496128IPR002110Ankyrin repeat
PROSITE profilePS5008812.50296131IPR002110Ankyrin repeat
PRINTSPR014151.8E-5115129IPR002110Ankyrin repeat
SMARTSM003564.1E-5275301IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5280300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774280302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035664310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
SHEMNHLSLD TEDYSLSSLL ELAANNDVSG FKRLIECDPS SIDEVGLWYI RHKESKKMVN  60
EQRTPLMVAA TYGSIDVMKL ILSLSEADVN LSCGLDKSTA LHCAASGGSE NAVDAVKLLL  120
EAGADVNSVD VNAHRPGDVI VFPTKLEHVK KTSLEELLQK TDDWSLLRVI TTTTSCNACS  180
PPLSTSPEIE IEIEIESPCS ARDSKMKSDE VTEKKEYPVA PSLPDIKNSI YSTDEFRMYS  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPEFRKGSCR RGDLCEYAHG  300
VFECWLHPAQ YRTRLCKDGT NCARRVCFFA HTNEELRPLY VSTGSAVPSP RSGAPSSAMD  360
FVTAMTMSPS SPSIAWSQPN IPALHLPGSN FHSSRLRSSL NARDISMDDF DLLLPDYDQH  420
QQQQQFLNEL SCLSPHAMNS NPMNRSGRMK LLTPSNLDDL FSAESSSPRY ADPALASAVF  480
SPTHKSAVFN QFQQHQQSLL APVNTNFASK NVEHPLLQAS LVMSPRNVEP ISPMGSRISM  540
LAQREKQQFC SLSFRELGSN SAASAASTTS ANSWSKWGSP NGNFDWPVGA SDEIGKLRRS  600
SSFELGNNGE EPDLSWVQSL VKESPADVKG KFATTVSNVS AAAAGSSSEG SNMSTQMESV  660
VDHAMLGAWL EQMQLDHLVA QQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225320.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028225321.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028225322.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028225323.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A445LBE00.0A0A445LBE0_GLYSO; Zinc finger CCCH domain-containing protein 30 isoform A
STRINGGLYMA03G29500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]