PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07037.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 279aa    MW: 30767.5 Da    PI: 8.6076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07037.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002294116123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C + F ++  L  H++ H
  KHN07037.1  94 FSCNYCQRKFYSSQALGGHQNAH 116
                 89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-691122No hitNo description
PROSITE profilePS5015711.40694121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
METLSHESPF YDNNLSAEKT PPSPSTPLQN PQEKKQLSVK EQEEAKTDTL LDLNAFGDDS  60
AVGCSPVLNL ITCLDTDLPS TSSENQHGSE PRVFSCNYCQ RKFYSSQALG GHQNAHRRER  120
SITKRGHHRS GSRGMMASAT TAFGIPFLHN HLHHYATMAS LPLHGGCSNN KPLGIKAHSI  180
IHKPSSNSSH ISFNGFGTTF GHHGWSRPLI DQQPRIGKLT MESCHKTSRG NVGKFDAVKT  240
TMINSATIEE ISGYNMISGV TRFKTNQEEM KHLDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028235189.10.0zinc finger protein 1-like
TrEMBLA0A445K5K20.0A0A445K5K2_GLYSO; Zinc finger protein 3
STRINGGLYMA06G06750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-40zinc-finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]