PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07023.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 294aa    MW: 32665.8 Da    PI: 8.0728
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07023.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30138196259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs edp+v+++tYegeHnh 
  KHN07023.1 138 RDGYQWRKYGQKVTRDNPSPRAYFKCSYApSCPVKKKVQRSVEDPSVLVTTYEGEHNHG 196
                 7***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.62E-25136197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-28136197IPR003657WRKY domain
SMARTSM007745.0E-35137197IPR003657WRKY domain
PfamPF031064.5E-25139195IPR003657WRKY domain
PROSITE profilePS5081125.603139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEMEPTCVDT SLNLNVIPSP HIDHLAGEVL FEELRRLSSE NKRLTETLNH LCESYVALQK  60
HLSEFSQLRN ANFDKEGTCA VPSLKRKPES ENCVNLFGTE CNTITEEETF KRPKHSTEPK  120
VSKVLTRTDA SDTGLYVRDG YQWRKYGQKV TRDNPSPRAY FKCSYAPSCP VKKKVQRSVE  180
DPSVLVTTYE GEHNHGQQHQ TAEISINSSS KSETPRPAVS PSAMNIRSSA AAGPIVTLDL  240
VKSKVVDINA QKSSLQQFLV HQMATSLTRD PNFTAALASA ISGRILDDTS VGKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-201391951974Probable WRKY transcription factor 4
2lex_A1e-201391951974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959760.0BT095976.1 Soybean clone JCVI-FLGm-15G12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240986.10.0WRKY transcription factor 17
RefseqXP_028235171.10.0probable WRKY transcription factor 40
TrEMBLA0A445K5P10.0A0A445K5P1_GLYSO; Putative WRKY transcription factor 40
TrEMBLC6TEF40.0C6TEF4_SOYBN; Uncharacterized protein
STRINGGLYMA06G06530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-73WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]