PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06609.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 314aa    MW: 35352.9 Da    PI: 9.8249
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06609.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-19178211134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  KHN06609.1 178 CSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 211
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.8E-13171212No hitNo description
SMARTSM004017.3E-21172223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558172208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-16176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.93E-15177209No hitNo description
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17178211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MIPAYRHSVS SVMPLDLNED QNHEFFSPIH HPSSSFSSLS SSYPILFNPP NQDQEARSYY  60
WETTKHLPSH EEEAEKIIPT SGSWGHSVEE SEHKVTVWRK EERNENLAED GSVKWMPSKM  120
RIMRKMLVSN QTDAYTSDNN TTHKFDDHKQ QLSSPLGIDD NSSNNYSDKS NNSIVRVCSD  180
CHTTKTPLWR SGPRGPKSLC NACGIRQRKA RRAMAAAAAA ALGDGAVIVE AEKSVKGKKL  240
QKKKEKKTRI EGAAQMKMKR KLGVGAKASQ SRNKFGFEDL TLRLRKNLAM HQVFPQDEKE  300
AAILLMALSY GLVH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196206.10.0GATA transcription factor 21-like
TrEMBLA0A0B2PG600.0A0A0B2PG60_GLYSO; GATA transcription factor 21
STRINGGLYMA13G00200.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-34cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]